RNA id: XM_036976895.1



Basic Information


Item Value
RNA id XM_036976895.1
length 1181
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110519479
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15047739 ~ 15054353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTTGTGATTGCTGCCCTGCCCACTATTTAACTGGAAGGAGAGCTATTCCACACAATTGTTTATGCTTTTTCTTTGGTTGTTTTTTTTCCAAATCTTGGGGGACAATTGTTGTTGCAACATGGTTTGGTTTCTGATTCTCATCTGGTTTGTCCAAGTGGGCAGTGTTCCCATCACCAATTTCACAAATGCTACTACTTCAAATGCTACTTTCCCTGCCACAGGTTCTACTGCCTCAATGGGGACACGCCACAGACTAAATGATTGGGTTAAAACGCCTGAAACCAGAGAAGAGGACTTACAGTTCGACCTTGCTATCATGGAGGGAGACATTCTGGTGTCGGAAGACCGATTAGCTGTGAAGTCACTTTGGCCTGAGAAAGATGGCGTCACTTCTATCCCCTACAAGGTCAACGATTATCTGGTGGACAGAAAGGTAACTATACTAGCAGCGTTCAAGATGATTTCAGACCAGACGTGTATCCTCTTCCACGAATACACCAATGAGATTAACTACATAGACATCATCTCTGGGACAGGCTGTGCGTCGTATGTAGGTTTTCAGGGCGGGGCCCAGTCTCTGTACTTCGGTAGAGCCTGTAACGTGGGGAACCTGTGCCATGAGCTGATGCATGCCCTGGGCCTGCACCACGAGCACACACGGCCAGACCGTGACCAATACGTCACCATACAGTGGGACAACGTGGTCCCAGGAAAACAAGAGAACTTTAAGGTGAAGAAAGGAGACACTCAGGACCTGCCCTATGACTACGACTCCATAATGCACTATGGAACATACTACTTCTCATCAAACCGGAACCCCACTATTGACGCCACGAAGAGTGGAGTCCAGATTGGACAGAGAAATCACCTGAGCCCCCTGGACATAACGCGCCTTAACAAACTCTATCAATGTGAATAACAATGCACAGTTTATCACTTATTGCACCATCCAAGAAGATTTCAACACCGCTGCTGTCAACTGAAGATTCCAACACAAATGGCACTGACATTTTAACTTCTCAACAATGAATAAGTTGAACAAGTCCCTTAAAGCTTTCTGATGTATTGTATGTGTGTTCAGCAGCAGGTAGTTTAATTTGTCCTGTGTGCTCTTGCTGCCTTGAATTAGGCCTATTCCACTGCACTTGTCTTGGAAATAAATCAAATGATCCAGTCAGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU421769 lncRNA upstream 74665 14972729 ~ 14973074 (+) True G371113
TU421767 lncRNA upstream 75949 14971481 ~ 14971790 (+) True G371111
TU421757 lncRNA upstream 84808 14962632 ~ 14962931 (+) True G371101
TU421750 lncRNA upstream 88244 14959238 ~ 14959495 (+) True G371094
TU421589 lncRNA upstream 88997 14958511 ~ 14958742 (+) True G370961
TU421834 lncRNA downstream 12672 15067025 ~ 15088540 (+) True G371170
TU421793 lncRNA downstream 20682 15075035 ~ 15075700 (+) True LOC110518158
TU421835 lncRNA downstream 23354 15077707 ~ 15100378 (+) True G371171
TU421837 lncRNA downstream 26339 15080692 ~ 15102326 (+) True G371172
TU421797 lncRNA downstream 36614 15090967 ~ 15150407 (+) True G371139
XM_036976889.1 mRNA upstream 13150 15027803 ~ 15034589 (+) True LOC110523290
XM_036976890.1 mRNA upstream 33127 15007790 ~ 15014612 (+) False LOC110518391
XM_036976891.1 mRNA upstream 33127 15007790 ~ 15014612 (+) True LOC110518391
XM_021601874.2 mRNA upstream 48303 14995248 ~ 14999436 (+) True dnlz
XM_021601856.2 mRNA upstream 131061 14912515 ~ 14916678 (+) False dolk
XM_036976894.1 mRNA downstream 11274 15065627 ~ 15075558 (+) False LOC110518158
XM_036976887.1 mRNA downstream 32525 15086878 ~ 15096757 (+) True LOC110519478
XM_036976892.1 mRNA downstream 62871 15117224 ~ 15145520 (+) False uck1
XM_021601872.2 mRNA downstream 84288 15138641 ~ 15145520 (+) False uck1
XM_036976911.1 mRNA downstream 410202 15464555 ~ 15591443 (+) False LOC110523300
TU421530 other upstream 242268 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 679578 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 721844 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 788606 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 1278443 13765247 ~ 13769296 (+) True G369763
TU421847 other downstream 69937 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 737206 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1165253 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1681289 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1816081 16870434 ~ 16882185 (+) False G372618

Expression Profile