RNA id: TU421793


Basic Information

Item Value
RNA id TU421793
length 554
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC110518158
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15065627 ~ 15075700 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCATTGTTGGGTTTCTCCTGGCAGATACTACTTCTCATCAAACCGGAACCCCACTATTGACGCCACGAAGAGTGGAGTCCAGATTGGACAGAGAAATCACCTGAGCCCCCTGGACATAACGCGCCTTAACAAACTCTATCAATGTGAATAACAATGCACAGTTTATCACTTATTGCACCATCCAAGAAGATTTCAACACCGCTGCTGTCAACTGAAGATTCCAACACAAATGGCACTGACATTTTAACTTCTCAACAATGAATAAGTTGAACAAGTCCCTTAAAGCTTTCTGATGTATTGTATGTGTGTTCAGCAGCAGGTAGTTTAATTTGTCCTGTGCTCTTGCTGCCTTGAATTAGGCCTATTCCACTGCACTTGTCTTGGAAATAAATCAAATGATCCAGTCAGTGTGATGTTTCTTGCAGTGTTCTATTTCATTCTATAATGGACCTTCTCAGCTATGCTCATCATGCATCCCAAGGTGGGATCAGAGATGAAGTAGATCTAGCATAGCAGGAGAGATGACTTAAATTAATGGTGATTAAGGTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421817 lncRNA upstream 18817 15015821 ~ 15056218 (+) True G371159
TU421816 lncRNA upstream 24099 15010816 ~ 15050936 (+) True G371158
TU421769 lncRNA upstream 101961 14972729 ~ 14973074 (+) True G371113
TU421767 lncRNA upstream 103245 14971481 ~ 14971790 (+) True G371111
TU421757 lncRNA upstream 112104 14962632 ~ 14962931 (+) True G371101
TU421835 lncRNA downstream 2007 15077707 ~ 15100378 (+) True G371171
TU421837 lncRNA downstream 4992 15080692 ~ 15102326 (+) True G371172
TU421797 lncRNA downstream 15267 15090967 ~ 15150407 (+) True G371139
TU421776 lncRNA downstream 41498 15117198 ~ 15187954 (+) True uck1
TU421874 lncRNA downstream 117249 15192949 ~ 15193278 (+) True G371206
XM_036976895.1 mRNA upstream 20682 15047739 ~ 15054353 (+) False LOC110519479
XM_036976889.1 mRNA upstream 40446 15027803 ~ 15034589 (+) True LOC110523290
XM_036976890.1 mRNA upstream 60423 15007790 ~ 15014612 (+) False LOC110518391
XM_036976891.1 mRNA upstream 60423 15007790 ~ 15014612 (+) True LOC110518391
XM_021601874.2 mRNA upstream 75599 14995248 ~ 14999436 (+) True dnlz
XM_036976887.1 mRNA downstream 11178 15086878 ~ 15096757 (+) True LOC110519478
XM_036976892.1 mRNA downstream 41524 15117224 ~ 15145520 (+) False uck1
XM_021601872.2 mRNA downstream 62941 15138641 ~ 15145520 (+) False uck1
XM_036976911.1 mRNA downstream 388855 15464555 ~ 15591443 (+) False LOC110523300
XM_036976909.1 mRNA downstream 389009 15464709 ~ 15591443 (+) False LOC110523300
TU421788 other upstream 21479 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 269564 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 706874 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 749140 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 815902 14255803 ~ 14259133 (+) True G370360
TU421847 other downstream 48590 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 715859 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1143906 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1659942 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1794734 16870434 ~ 16882185 (+) False G372618

Expression Profile