RNA id: XR_005051652.1


Basic Information

Item Value
RNA id XR_005051652.1
length 3759
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110523286
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15098785 ~ 15117065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAATCGCAAACGTTACCGCTTTAGTTTAGCTAGCGACATTTTTTGAATGTTTATATGTATTGGTAGCAGATTATAAATAAAAATGAGCGACGAAGCTGTATTTGAAACAATTGAAGAGGTCAATAAGCATCTCACACGTGGAAGAGTCAACCTGTGTGAAATATATTTCTTACCGTGTGGACAAGCGATTCAATGACCAAGGTTGGAAACCACAGGACCACAAGAACCGGTTATACTGGGAATGGAAGTACGGCAAGAGTACTCCCTCTATCCCCTTTGACAGAGTACCCTTCATGTTCATTTGACACAAACTGATGGGATGCCACAGGGGCCGGGCAAAGTGTGGATTCAAGAAGAGGCAGGAACTTGAGGATCAAAGGGAAAAAGATGGCAAGGAAAAAAGAAACCTGTTGCTGAAAACCAAGAAAGTAGCATGCCCTGCTGTGTTCACAATCAGCCGCATTGTGAAGTTCCCTGGATTCAAGTTGGAGAAGGACCCATCGCGGTTGAGGAGGGTCATGTCTATTTCCATCAAACAAGCTCTCCAGACAGACCCAGCCTCGGTGCAGTGGAAGATACAGTATTTCCTCAAAATACCCAGTTTCACTGACCACAAGGGCCATCCTATTGGAAAGGGTGCAGATCAGATGGACGACAGGGTCAAAGGTTACATCCGAGCGTTGGTGCAGCAGGGGGTGAGGAAGGTGAAGGAGGTAAAGAACCAGATGGTCCAGTACGTGCGGACGGAGCTGTTCCAAGACACGACCCCGCCGCCACTGAGGCGCTTCTTCCCCACAGAGAAAACCATCCACGCCGTCATGGCTCAGGTCATCGCGGAGGAACACTACAGCAAAATAGACCTGGTCAACCTGCTGCCATGGGCAAATCGGACTGCACAGGATGATTTCTGCACAGGAACTAGTGAACTCCACAGGCCCAGAACACACCAGCCTCACAACTCCTCACAACTCCCCAGCCTTAATGTGTGTAGGCAGGACAAGGAGAACACCGATTCAATCCAGAAGAAGAGGAAAAAGAAGAGGCTAAATGAGAAGGGAACCCAGGTTGAACTAGGCATGCGGGAGGATATCCATGACCTTGACCTCGCCCATTGGAGATTGGCTAGAGAGACATGGAGAACTGAGCGAGGAAACATGAGGGAGATTAAGGCGCTGTATGGAGAAATATTTAGGCTGCACCAACTCTTGGAGGAGATTGGGGTGGATAAAGGGGTGATCAAGCAGCGCTCCACCTCTTCCATTATTTGTCCCGTCTCCCCGACACTGCCAGCTTTCCCCTGGTACAACCACCACAGgtacctcgccaacagccaatcgGAGCCTGACCAGCATACTGCCGGCACCCAGAAGGACCCACCTAAGAAACACTCAATCTTTCCCCCTCTGGACACACAGAGCTGCACCTCCCCTGATAAATGGCCTCATTCTCCGTCCAAGACGTCACACCCACACGCTTCACACCGATTTGCTGTCCCATCCCACCTCCTGGCTCCCGGCCATCCTGCCCGGATGAGACAGACCCATCCGCAGGTCCACCCCAGGTCCCCATTGACTGGCCAGGCAAAGGTCAAGGATGAGGTTAAGAGGCAAGAGACTGCATCGTCTGAGGAATTGTCTGAGGAAGTTCAACGGAGAGGAGCAGAAATTGCAAGCATGTATAAAGCACAGCTGAAAGAGAGGATGGCCcaaaagagaaaggaagagattCTGAAGAAAATGGCAAACAGCGATGACAAGAACGATGACAGTGAGGCCTCCTGCTCCTCTGCAGTAAAACAATCTAATATCCCTGCCACAGCCCCCGAGCGCCCGGACAGCCCAGAGGCCACGCCAGTGGCCGCCCGAGAGGACACTCAGGGGGACACCCAGCAGGACCTGGCAGAGGTTGTGAATGTGCTCAAGAGGCAATCATCTGATCTATACCTGCCTGACGATGTTTGTGAGGAGTCACTCACATGGAAATCCATTTACGAGGAGCTGTGCCCGCTCGCTCACAGAGTGAACACAGAAGCTGACTACATCAAGGCGCTTCGCGTCATCACTGAGAATGCTGTGACTCCCTCGTGCTCGTCTGAGGATGACGTGTCTCAGAGTGTGAGTGAGGACACAAGTCAGGAGGGGAGTAGTGAAAGTGAGGAGAGCATGAGTGGACAACAGCAGAGATGTCTACACAGGGATCCTTATGGTAAGAGGGACAGGAAGGAGATTGATAGTGGTAAAAGGGAAGGGAGATTTGCAACCGCCAATGCAATGTCTATGATGGCGAGCCGAGGGATAGAAGAACTTAATGCCATGAGCTACACAGACAGGATCAAATATTTCAAGTATGAGGCTAAGAGAAATGAAGAGATGATGAAGATTGAAAGGAGGAAGGAAAAAGCCAGGGACGAAGAGCTCAAAAAGTGGGAAAAGAGACAGAAGAAATTGAATGAGGAGGAAAGGAAAAGGAcagaaaatatggaaaaaaacAAGTTAGAGGAGCAGAGGAAAAGGGAGAAGGCAGAGATGAAACTAAAGATCGAACATGAGAAAAAGAGACAAGAgcaagagaaaaagagggagaaaaaagaaagaaagcagCAGGAGATGCAACAGAAGGCCCGTGCAAAAGAAGAGAAAAAGAGGGCAGAGGAAGAGAaaaagatggagaaacagaggatggaggaggagaggaacaggggaaAGGAGAGAATGAAGGTGTTGGAGATGCAGCAAAAGGCAcgaaagaaagaagagaagaggaggaaagaggaacaGAAAAGGAGATTGAAGATACAACAGGAACAAGAGAAGGAGGAACAGAAAAGGAAGACAAGGATACGGGACGAGGATAAGAAGAGAGCAGAGCTTCAAAGAATAAAAGATCACGAGGCCAGGTTCAAGATGGAGATGGAGAAACtgtatgagagagaagagaggaatgcACAGATTGAAAGAGAAAAGAGGCGTGCGCTGTGTCAGAAaaaaggacagacacagagagcaaaACAGGTGGTGGCATACGAGGTCACAGCGTCTACATCTGACGCCTCTGTgcggagggaagagagagagcagcgtCCAGAGACCGCTCACGCACAGTCTGCAAAGAGGAGAACAAGGAAGAAGCAGAAGAAAGCGGCGGACGAGGCATCGACAACTTTTCAGTAGATGACAAAAGAAAGGGAGCAGACAAAAGAAGAAATGTACAAGTCAATGCTCCTAGCCTGTTCAAGTCTGAGATAGATGAAAAGAGCAGCCAAAGAAACATCTGTTGAAGCATCAATTGGAAAGGAtaggagggttggaggaggagcaCAGCTGGATGACTTCATTAGATTGTGGCATATGAGGTCTCTTTATCTGTTGAAGCATCAATAGGAAAGGatgaaagggagggaggcaggaagaGGAAAACACAGAAGAGCAGGTGAGGAGCACTCTATGTTCTGCTTCCATGTGGATTGACAGCATTGCTTTCATGAGCTTCTGGAGGACAccatggaggaagagggagagggtctATGATAGGCAGTTTGCCATGGCCCTAAATGGGCCTTTGGATGTTAATTCTTTCTGCTTTATATCATACAACTTTACAATAAAAATGAATTGTAAGCATCAGCCTCTTCTGTTGTGTGATCAGTGCAGTAGTAGTAAGATTGGTGTAAACCCAAGGAAtattctggccttctaggcagagttcctctgtccagtgtctgtgttcttttgcccatcttaacatttttattggccagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421959 lncRNA downstream 2129 15051764 ~ 15096656 (-) True G371271
TU421962 lncRNA downstream 44867 15033715 ~ 15053918 (-) True G371274
TU421960 lncRNA downstream 46822 15031800 ~ 15051963 (-) True G371272
TU421949 lncRNA downstream 49634 15008636 ~ 15049151 (-) True G371268
TU421966 lncRNA downstream 56097 15042204 ~ 15042688 (-) True G371276
TU421980 lncRNA upstream 2739 15119804 ~ 15140073 (-) True G371286
TU421989 lncRNA upstream 7038 15124103 ~ 15128857 (-) True LOC118936653
TU421975 lncRNA upstream 14703 15131768 ~ 15136742 (-) True LOC118936652
TU421990 lncRNA upstream 19770 15136835 ~ 15137685 (-) True LOC110523287
TU421977 lncRNA upstream 31482 15148547 ~ 15149001 (-) True G371285
XM_036976885.1 mRNA downstream 16197 15078799 ~ 15082588 (-) True LOC110523297
XM_036976886.1 mRNA downstream 37401 15056380 ~ 15061384 (-) True LOC110519481
XM_036976538.1 mRNA downstream 55307 15036595 ~ 15043478 (-) True LOC110516435
XM_036976537.1 mRNA downstream 74970 15016756 ~ 15023815 (-) True LOC110523296
XM_036976884.1 mRNA downstream 103588 14988147 ~ 14995197 (-) False LOC110524957
XR_005051660.1 mRNA upstream 3289 15120354 ~ 15121731 (-) False LOC110511258
XR_005051661.1 mRNA upstream 3289 15120354 ~ 15121731 (-) False LOC110511258
XM_036979091.1 mRNA upstream 8697 15125762 ~ 15127293 (-) True LOC118964741
XR_005051664.1 mRNA upstream 10531 15127596 ~ 15129366 (-) False LOC118936653
XR_005051663.1 mRNA upstream 14443 15131508 ~ 15133459 (-) False LOC118936652
TU421926 other downstream 103626 14993128 ~ 14995159 (-) True LOC110524957
TU421214 other downstream 670194 14427338 ~ 14428591 (-) True G370635
TU420894 other downstream 890080 14207190 ~ 14208705 (-) True G370333
TU419308 other downstream 2392693 12705566 ~ 12706092 (-) False G368921
TU421988 other upstream 6410 15123475 ~ 15124789 (-) True G371294
TU422760 other upstream 579027 15696092 ~ 15698329 (-) True LOC110523302
TU422972 other upstream 858541 15975606 ~ 15976116 (-) True G372122
TU422973 other upstream 861437 15978502 ~ 15981215 (-) True G372123
TU424074 other upstream 1817170 16934235 ~ 16942191 (-) True LOC110523341

Expression Profile