RNA id: XM_036976892.1


Basic Information

Item Value
RNA id XM_036976892.1
length 1276
RNA type mRNA
GC content 0.49
exon number 7
gene id uck1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15117198 ~ 15187954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGTTGAGGACAACACGCTTGACGGTACCGAATGTAAAATATTTTCGTAGCAATTTTCCTCAATGTTTCAACAGAATACAATCCGGGTTACGAATCGTATATTTTGGCATAGAAGTTATAATTTGTCGAGATCATGGACTCAGTTATCAAGGACAATACTACTGCACGTACAACCGCTTGCATCAGGGACCAGTCAATGGTCCTCTTCACAGTCAAGACAGCAGTGGTCCGAAGAGACGTACCTCTACATAACCAATTCTCTACCACAACACACGTCTGCAGCGATTCTATTGGGAAGATTCATTCAACGCATTACCACTTGGTTTACACATGCAAGTCTACCGTATGTGCCAAAATCATGGAGTTACTGGGCCAGAACAAGGTGGACCATCATCAGAGGAAAGTTGCTATCGTCAGCCAAGACAGTTTCTACAGAGTCTTGACACTTGACCAGAAGGCCAAGGCACTCAAGGGCCAGTACAACTTTGACCACCcagACGCTTTTGACAACGAGTTGATGTACCAAACCCTGAAGGATATTGTGgaggggagtgtggtggaggtgcCGACATATGACTTTGTCACGCATTCCAGGCTGCCGGACAGGATCATGGTGTACCCGGCTGACGTGGTTCTGTTTGAGGGCATTCTGGTATTCTACTCTCAGGAAGTGAGGGACATGTTTCACATGAAGCTCTTTGTGGACACTGACTCTGATGTCAGGCTTTCCCACAGAGTTCTGCGGGACATGAAGAGGGACAGAGACCTGGAGCAGATCCTTAACCAGTACACTACGTTTGTCAAGCCAGCCTTCGAGGAGTTCTGTTTACCTACCAAGAAATATGCAGATGTAATTATTCCTAGAGGAGTTGACAACATGGTGGCCATCAACCTCATCGTGCAGCACATCCTGAATGAGGACCTCTGTAAGTGGCAGCATGGAGGAGTGGTGAACGGGCACAGCCGTGGTTTCAAGCGGGCCTTCTCGGAGCAGGGGGACCTGGACAACGCCACAACCAACCTTCCCCTAGGGAAGAGGGTCCTACTGGAGCCGAGCAGTCGCCCCCACTGAGGCagccatctctgtgtgtgtgtttactctgACTGACAGTCTACTTCTATatacactttcctaatattgagttgcacccccttttgccatcagaacagcctcaattcgttggagcatgggctctacaaggtgttgtaagcattccacagggatgctggcccatgttgactccaatgcttcccacagttgtgccaagttggctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421837 lncRNA upstream 14898 15080692 ~ 15102326 (+) True G371172
TU421835 lncRNA upstream 16846 15077707 ~ 15100378 (+) True G371171
TU421834 lncRNA upstream 28684 15067025 ~ 15088540 (+) True G371170
TU421793 lncRNA upstream 41524 15075035 ~ 15075700 (+) True LOC110518158
TU421817 lncRNA upstream 61006 15015821 ~ 15056218 (+) True G371159
TU421874 lncRNA downstream 47429 15192949 ~ 15193278 (+) True G371206
TU422064 lncRNA downstream 110582 15256102 ~ 15256318 (+) True G371367
TU422121 lncRNA downstream 201608 15347128 ~ 15347847 (+) True G371420
TU422153 lncRNA downstream 272973 15418493 ~ 15418732 (+) True G371452
TU422154 lncRNA downstream 273457 15418977 ~ 15419301 (+) True G371453
XM_036976887.1 mRNA upstream 20467 15086878 ~ 15096757 (+) True LOC110519478
XM_036976894.1 mRNA upstream 41666 15065627 ~ 15075558 (+) False LOC110518158
XM_036976895.1 mRNA upstream 62871 15047739 ~ 15054353 (+) False LOC110519479
XM_036976889.1 mRNA upstream 82635 15027803 ~ 15034589 (+) True LOC110523290
XM_036976890.1 mRNA upstream 102612 15007790 ~ 15014612 (+) False LOC110518391
XM_036976911.1 mRNA downstream 319035 15464555 ~ 15591443 (+) False LOC110523300
XM_036976909.1 mRNA downstream 319189 15464709 ~ 15591443 (+) False LOC110523300
XM_036976910.1 mRNA downstream 319189 15464709 ~ 15591443 (+) True LOC110523300
XM_036976915.1 mRNA downstream 604671 15750191 ~ 15756122 (+) False st6galnac4
XM_021601899.2 mRNA downstream 607384 15752904 ~ 15756190 (+) False st6galnac4
TU421788 other upstream 63668 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 311753 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 749063 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 791329 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 858091 14255803 ~ 14259133 (+) True G370360
TU422347 other downstream 646039 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1074086 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1590122 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1724914 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 1724914 16870434 ~ 16882185 (+) True G372618

Expression Profile