RNA id: TCONS_00030856


Basic Information

Item Value
RNA id TCONS_00030856
length 370
RNA type processed_transcript
GC content 0.53
exon number 2
gene id XLOC_015415
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23222939 ~ 23293501 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGATCTGTTTCTCTATGGCACCATCAGCCTAGAGGGAAAACCCTGCTCAGACAGAAGCCCTCATTGTGGCATGAAATATATCTGCCGTGCAGGGTCCGGACGGAGTTTGAAGTCGGTAACGGTGGATGGTAGATTGCCAGGCGTGACAGCGTATGAGACCCTCAGATATTCTGTTGCGGGGAGTTGGCGCTGAGATTCGGAGTGCCAGCGATGTTTTGACagctttaaaatGAGTACGATGAGGAATGGGGGAAGAAGATCCAAAGCGAGAAGTTTCGCTGGCATAACTCGCAGTGGTTGGAGATGGTGGAGAGCAGACAGATGGAGGACGGCGAGCCCTACATGTATGGAGATGACCCGGAGGCTC

Function

GO:

id name namespace
GO:0044782 cilium organization biological_process
GO:0007018 microtubule-based movement biological_process
GO:0035869 ciliary transition zone cellular_component
GO:0005871 kinesin complex cellular_component
GO:0005930 axoneme cellular_component
GO:0016939 kinesin II complex cellular_component
GO:0019894 kinesin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2219 Predicted to enable kinesin binding activity. Predicted to be involved in cilium organization and microtubule-based movement. Predicted to be part of kinesin II complex. Predicted to be active in axoneme and ciliary transition zone. Orthologous to human KIFAP3 (kinesin associated protein 3).

Ensembl:

ensembl_id ENSDART00000142434

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033524 lncRNA upstream 89528 23156012 ~ 23184804 (+) False XLOC_015414
TCONS_00033525 lncRNA upstream 89528 23156014 ~ 23184804 (+) False XLOC_015414
TCONS_00030853 lncRNA upstream 89528 23156047 ~ 23184804 (+) True XLOC_015414
TCONS_00033523 lncRNA upstream 247354 23025321 ~ 23026978 (+) True XLOC_015410
TCONS_00030845 lncRNA upstream 259716 23011833 ~ 23014616 (+) True XLOC_015409
TCONS_00033526 lncRNA downstream 131672 23406453 ~ 23410848 (+) False XLOC_015418
TCONS_00033528 lncRNA downstream 131672 23406453 ~ 23442528 (+) False XLOC_015418
TCONS_00033527 lncRNA downstream 131672 23406453 ~ 23442528 (+) False XLOC_015418
TCONS_00033529 lncRNA downstream 140102 23414883 ~ 23416355 (+) False XLOC_015419
TCONS_00033530 lncRNA downstream 140102 23414883 ~ 23421047 (+) True XLOC_015419
TCONS_00030852 mRNA upstream 142198 23130389 ~ 23132134 (+) True XLOC_015413
TCONS_00030851 mRNA upstream 171183 23081402 ~ 23103149 (+) True XLOC_015412
TCONS_00030850 mRNA upstream 174688 23081248 ~ 23099644 (+) False XLOC_015412
TCONS_00030849 mRNA upstream 174689 23081247 ~ 23099643 (+) False XLOC_015412
TCONS_00030848 mRNA upstream 196849 23062085 ~ 23077483 (+) True XLOC_015411
TCONS_00030857 mRNA downstream 76673 23351454 ~ 23361933 (+) False XLOC_015417
TCONS_00030858 mRNA downstream 76752 23351533 ~ 23355705 (+) False XLOC_015417
TCONS_00030859 mRNA downstream 77521 23352302 ~ 23361009 (+) True XLOC_015417
TCONS_00030860 mRNA downstream 208017 23482798 ~ 23484348 (+) True XLOC_015421
TCONS_00030861 mRNA downstream 338259 23613040 ~ 23620219 (+) False XLOC_015424
TCONS_00030855 other upstream 16435 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030841 other upstream 282811 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030832 other upstream 607632 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030805 other upstream 1898738 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030797 other upstream 2031314 21186377 ~ 21243018 (+) False XLOC_015381
TCONS_00030864 other downstream 405092 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030870 other downstream 738469 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030885 other downstream 1073808 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030891 other downstream 1209508 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030897 other downstream 1265266 24540047 ~ 24540765 (+) False XLOC_015445