RNA id: XR_002473427.2


Basic Information

Item Value
RNA id XR_002473427.2
length 1944
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110523302
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15693396 ~ 15707607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACGCCTCCTGGCGGCTATGTTGAAAGACTACTGCATGAATTATTCTGACAACAGCCGAGGGGCTACCCCAAACTGAATGATAAAAGTTACTAGAACTAGTTGATTCATCACAACGGTCATTTTCTGTGGAGTATATGGCTGCTCAAACGAGGCCGGAAACACAAAGGGGGGAAAAGATGTTTACAGATTCCCCGCAATCATGAAACACCATTGGCAATACCAATGAGATAAGACTCAAGAACTCAGAGAAGCGAAGAAACCTTTTTGCCCGTCAAGACCTCAACACAGACAGCTGTCATTACAGGGTTTGCTACGATCATTTCATCATTGaagcagaccaggacaaggagagtaggaagaagAGAATACTTCAAAATGAGAAGATCCTGCCATGGAAAAGAAGACTGGGTGGACATAAAGTGGAAAGGAGGGGAAATAACTCACAACATGCAGCAGGACACCTTCAGCTGTGGGGTCTTTGTAATGCAGATGGCCATCCCCTTCCAAATTGATATGGAACCTTCAAAAACACATGGCAACTGCGGAAAGAAATGGCTGAGGATAGACAAAAAATGTCTGAGTTCAACAAAGCCAACAACTGCTTCATGTGTGCCACTGATAAAGAACCTGGATGTGGCCCAAAGACTGACTGGTAGGTTCCCCAGCTGACCTAtatcaagacacccatgttgaCTGGATTCCCCCTGTGAAGAGGAGTCATGCTGCAGCAGCATCCGATTCTACTACTTGTTCATCTTTTTCCAGACATGAAAGAAGACTCCCCTCAGTTATATGACATGGTTGTCATATGCTGTGCTTTGGACAATTTGAATGATTGAGTAGAGCACCTTGTCATGACAAAAGTGCCCCCTTAAACTGTATGAATATAATGTATTTGGAACGTTTAAAAGACTTGTTGATATTGTAAACATACTGTACTTTAAGCCATATTGTTGTCCAAGGGTAAAGACAAGTATTTTGTCATCTTTGCTTTGCCTAGCCACATTGAATAAAAAGTATTTCTTATGGCCCAACTATTGCCATGTTCCTTGCTTTTCAGAAATGTGGTTCTCAAACAAGATGCACCCCATGGCTATCCAACTCGATGGATTCTTCATTCACCGGGCAGACAGGTGATATTAATTTGGCGTCACTAAATCAAAAAGATATATAattcacatgcgccaaatacaacaggtatagatagaccttacagtgaaatgcttacttacaagcccttaaccaacaatgcagttaagaaaaataagtgttaaagtatttactgaaataaactgaagaaaataattaattaaaaaaTGAAGGTGCAACAATAAAATGacgttagtcgaggtaatttgtacatgtaggtaaagtgactatgtttgtataataaacagagtagcagaaaaagtttggcatgggctctcaaatcctgaaaaggttctacaactgtaCCTTTGAGAGCTTAtagactggctgcatcactgcttggtatagcTATAGCATCGCCCTCGAtcacatggcgctacagagggttgtgcgggcagcccagtacatcactgaggccgagctccctgccatcctggACCTCCATATCAGGTGAAAGACCCCAACCACCCATGCCATAGATTTTCTTTGCTGCAGCACAGCAAGagcttgaacagcttctatccccaagcaatacgACTGATAATTAGCTAACAAAATTGCTACACGGACCAAGTTTACCTTGCATCTTTATTGACcttttatttcagtgttttacaccgtctatgcacactcacagggccctgtCACTGTCACTCCAAAACAAACACTCCATtttctcactcacacataatatgctgctgttactctgtttatcttatatcctgttgcctaaTCACCTTACCCCtaaacatatctacctccatcactccagtatccctgtcaccttacccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422820 lncRNA downstream 7494 15685898 ~ 15686111 (-) True G372015
TU422757 lncRNA downstream 85972 15598237 ~ 15607633 (-) True G371956
TU422755 lncRNA downstream 86438 15603974 ~ 15607167 (-) True G371954
TU422799 lncRNA downstream 98321 15593717 ~ 15595284 (-) True G371994
TU422790 lncRNA downstream 105496 15581704 ~ 15588109 (-) True G371988
TU422861 lncRNA upstream 109233 15816840 ~ 15817633 (-) True G372054
TU422863 lncRNA upstream 111377 15818984 ~ 15819222 (-) True G372056
TU422865 lncRNA upstream 114078 15821685 ~ 15821906 (-) True G372058
TU422866 lncRNA upstream 114851 15822458 ~ 15822944 (-) True G372059
TU422867 lncRNA upstream 115694 15823301 ~ 15823630 (-) True G372060
XM_021601888.2 mRNA downstream 14026 15610346 ~ 15679579 (-) True setx
XM_036976897.1 mRNA downstream 468273 15149438 ~ 15225332 (-) True rapgef1b
XM_036976898.1 mRNA downstream 468274 15149438 ~ 15225331 (-) False rapgef1b
XR_005051662.1 mRNA downstream 555578 15135601 ~ 15138027 (-) False LOC110523287
XM_036976528.1 mRNA downstream 558126 15134692 ~ 15135479 (-) True LOC118964537
XR_002473431.2 mRNA upstream 16182 15723789 ~ 15734869 (-) False dolpp1
XM_021601889.2 mRNA upstream 16185 15723792 ~ 15734869 (-) True dolpp1
XM_021601894.2 mRNA upstream 32466 15740073 ~ 15751739 (-) False miga2
XM_021601890.2 mRNA upstream 32466 15740073 ~ 15751740 (-) False miga2
XM_021601892.2 mRNA upstream 32466 15740073 ~ 15751744 (-) False miga2
TU421988 other downstream 568816 15123475 ~ 15124789 (-) True G371294
TU421926 other downstream 698446 14993128 ~ 14995159 (-) True LOC110524957
TU421214 other downstream 1265014 14427338 ~ 14428591 (-) True G370635
TU420894 other downstream 1484900 14207190 ~ 14208705 (-) True G370333
TU419309 other downstream 2987513 12705566 ~ 12706092 (-) True G368921
TU422972 other upstream 267999 15975606 ~ 15976116 (-) True G372122
TU422973 other upstream 270895 15978502 ~ 15981215 (-) True G372123
TU424074 other upstream 1226628 16934235 ~ 16942191 (-) True LOC110523341
TU424339 other upstream 1416430 17124037 ~ 17125807 (-) True G373228
TU424730 other upstream 1781419 17489026 ~ 17521487 (-) True LOC110523354

Expression Profile