RNA id: XM_036976916.1


Basic Information

Item Value
RNA id XM_036976916.1
length 1989
RNA type mRNA
GC content 0.42
exon number 6
gene id st6galnac4
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15750191 ~ 15756190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACCATCACTCACAACAAGGAAAACTAGGTGAGATACCCAACTTATTTCCCACCAATTGTGATGAAATCCATTAGGGGAGGGGCCAGAGGTCTCTAATGGATATGAAGTCTCAGATCAGATGGGTCCAACAGCATGGTCAACATTGGTCTCCAAGGATACCTCAGGATCACCCCTGGCAGGAGGGATCAGTTTCTGAAGATGCACTGCCGCCAGTGTGCCTTGGTGTCCAGCTCGGGACAGATGCAGGGGGCAAGTCTCAGAGAGGAGATTGACCAAATGGGGTGTGTGATCCGCATGAACAACGCCCCCACGCTGGGCTATGAGAGGGACGTAGGGAGCAGAACCAGTCTGAGGGTGGTATCGCACACCAGTGTTCCCCTGCTGATTAAAAACGAGAGCTATTACTTCAGGCACTCTGCGGACACCACCTACGTGTTCTGGGGTCCTGAGCGGAACATGAGGCAGGATGGGAAAGGGCGTGTTTTTAATGCCTTGATGAAGATGGCCACGAAGTACCCGCAGGTCAAAATATACATGGTGACTCGGGAGAAGATCCAGTACTGTGACAGTGTTTTTCAGAACGAGACAGGGAAAAACAGAATGAATTCAGGTGCTTTTCTCAGCACTGGTTTCTTCACCATGATCCTGGCCATGGACATATGTGACAGTATTCACGTCTATGGGATGATCGACGATAACTTCTGCAGCCGTGCCGATCACAGTGTTGCTCCTTACCACTACTACGAGGGAAGCCGGATGGACGAATGCCGCATGTACCGGATGCACGAGCACGCAAGTCGTGGCGGCCATCGCTTCATCACCGAGAAGGCCATCTATGCCCGATGGGCCTTGCACCACAGGGTGGAGTTCAAACACCCTTCCTGGAACCTGCAGGAGAGGAAACATGACCCCTGAGTGTTGTGCCTGGTGACTTTTTAAAATCTTTGTTGACCTCCGTTGGGGAATTCTGTGCAGTATGAGAGTCAAATGATCTTACTCCTTCATGGGGCTGCAGTATTAATTCTAATATTTATGACAGTCTAAATggtgttcaaaacattgcattcaATAGTCAAGCATCAAACTGCCAACTTTTTTACATTGGTCAAAGTGCTCATATTTTTCATTTTAGACCTTTAGCCTATGTCTAAAGTACAGTATTCTGACCACTAACCACTATTAAATTAAAACTGCTATTGGTAGGTCTAGTGATGCCAAATCAAATAAGATTTTTAGTGTTTGAACAAACTTGATGCCTTCGTTGTTTGTTTGTCATAATTATGTCTTTTCATTTCTGCACTCTTAAAATCCAATGTTTTGTCATTTAATGTAGCTTTTATGATGCACTGACTGAATGTTCACCAACGTATTATGTTTTTTCCTGTTCACTGCTATATGCCCATGTATTTCAATGTAATGAAACATTGTTGGGCTTTCCTATCAGAGTTTAGTCTTAACAACATTTCAATCTTTTACATATATTTATTATGTTATGGTTCAAATGTAACAAGAATCATGAATTTAGTGTCACTGAAATATAATAATGTGCTGGTCATTTACTATCAGAGAAAGTGACTATCTGATAGCAAAGAGAGACTATTTTGCTGATTTGATTGGTTTTTGCAGAGGCCAATGGAACGATTTGACATGTTATGAGTAGAGATTCATCCCCAAAAAGTGTGCCTTTTTCTTTAACTTCCTATTTTTGTCTGACATTATACACTTGTTGACTTTAAACAAAAAATGTTGTTGCTTGACAATGTAAATGGTTTAATGTTACTTTTATATAAGGTCTGATATGCCTTATATTCTGATGGTCTTAATGATATTTACAAAGCTTGACAATCCTACAATCATGTTCAACGGAAAATCCCTATAGTGCTCTCTTTTAGGAAATATGACATGCTCTTTACCTGCCTTTTTAAATTACTTAATGATGTTGTCTGATTCCAAAGAAATGTTTTATAAATGTTTACAGTATTGTGGT

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K03373 SIAT7C, ST6GalNAc III; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7C)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422343 lncRNA upstream 38416 15714329 ~ 15714595 (+) True G371612
TU422341 lncRNA upstream 39810 15712970 ~ 15713201 (+) True G371610
TU422323 lncRNA upstream 54320 15690051 ~ 15698691 (+) True G371598
TU422322 lncRNA upstream 64564 15688226 ~ 15688447 (+) True G371597
TU422292 lncRNA upstream 101575 15650978 ~ 15651436 (+) True G371567
TU422350 lncRNA downstream 35437 15791559 ~ 15793624 (+) True G371615
TU422370 lncRNA downstream 59083 15815205 ~ 15815749 (+) True G371632
TU422377 lncRNA downstream 95248 15851370 ~ 15851721 (+) True G371639
TU422392 lncRNA downstream 113651 15869773 ~ 15870026 (+) True G371653
TU422395 lncRNA downstream 131116 15887238 ~ 15916078 (+) True G371656
XM_036976911.1 mRNA upstream 161568 15464555 ~ 15591443 (+) False LOC110523300
XM_036976909.1 mRNA upstream 161568 15464709 ~ 15591443 (+) False LOC110523300
XM_036976910.1 mRNA upstream 161568 15464709 ~ 15591443 (+) True LOC110523300
XM_036976892.1 mRNA upstream 607491 15117224 ~ 15145520 (+) False uck1
XM_021601897.2 mRNA downstream 137 15756259 ~ 15772026 (+) False st6galnac6
XM_036976914.1 mRNA downstream 185 15756307 ~ 15772026 (+) False st6galnac6
XM_021601898.2 mRNA downstream 1405 15757527 ~ 15772026 (+) True st6galnac6
XM_021601905.2 mRNA downstream 32673 15788795 ~ 15791028 (+) True LOC110523312
XM_021601908.2 mRNA downstream 40055 15796177 ~ 15802214 (+) False med22
TU421847 other upstream 624194 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 699455 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 947540 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1384850 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 1427116 14321104 ~ 14325895 (+) True G370382
TU422347 other downstream 35437 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 463484 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 979520 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1114312 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 1114312 16870434 ~ 16882185 (+) True G372618

Expression Profile