RNA id: XM_021601895.2


Basic Information

Item Value
RNA id XM_021601895.2
length 2482
RNA type mRNA
GC content 0.44
exon number 12
gene id spout1
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15770905 ~ 15775789 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattatgcgAACCGGAAGTGTCCGTTTCTGTTTTCACGTGTTGGTTGCAGGGAAAGATGACGGACAGCGTTGCATCGAAAAAGCCCAAATTGTCCTCTTCTCAGGGCGAGGACAGAGTAGATTGGAAGAAATGGAAAGCGGAACGAAAAGAGATCAAGAAGCAAATCAAAGAATCCAAGCTGATTCAACAACTTGACAAGCAGaagcaagaggaggaggagaagactgAGGCAGCACTGCAGCAGAGTCAGAGGGAAAACCGATCAGGACGGTCGTACACAGTGAGCGTGGCCTTGCCTGGTTCTGTCCTGGACAATGCCCAGTCTACAGAACTCCGCACATACCTGGCTGGACAGATAGCCAGAGCCTGCGTCGTGTTCTGTGTCGACGAGATCATCGTATTTGACGAACAAGATGAGGATGTCAAGACTGTTGAGGGAGAATTCAATGGTGTCGGCAAGAAGGGTCAAGCCTGCATTCAACTGGCTAGAATCCTCCAGTTCTTGGAATGCCCACAGTACCTGCGCAAATCATTCTTCCCAATGCATAAAGATTTACAGTATGCCGGCTTGCTCAACCCTCTGGACAGCCCTCACCACATGAGGAAGGATGATGAGTGTGAGTACCGGGAGGGGGTGGTCCTCGATCGGCCTAGCAAACCAGGAAAAGGCTCCTTGGTCAACTGTGGAATGTGGAAGGAGGTGCAGATAGATAAGCAGCTACAGTCTGGTCTCAGAGTCACTGTCCACATGAACAAGATCCAGAATAAAGaTGGTAGACTACACAAAGGGGTGGTGGTGGCGCCTCACAAGCCGCGAACAGAGGGAGGTCTGTACTGGGGCTACAGTGTTCGCCTGGCCTCAAGTCTAAGTAATGTGTTCACCGAGTGTCCACATAAAGAGGGCTATGATCTGACCATTGGAACATCTGAGAAAGGCAGTGATGTTGACAAAACTTCTCTTTCTCCATTCAAGCACATGTTGGTTGTGTTTGGTGGTCTGCAGGGCTTGGAGGCCAGTGTGGATGCTGATCAGAACCTGGAGGTGGCGGACCCCGGTGTCCTATTTGACCTGTACCTCAACACCTGCCCCAACCAGGGCAGCAGAACCATCCGCACAGAGGAGGCCATcctgatctccatgtccagcctgAGGCAGAAAATCACAGCCGCATTTCCAGACAAGTCGAACGGTTCATAACAGGAAGTGGCTACTGACAAACCATCACTAAGAGGAAGACTAAAGGATCTAAAAATAATTCACTTTTTTGGGGAACTGGGTGAAGCTAACTGACCCAGGAGTCGATTTAATATTTAAATACTTCTGGGTTCGAATGAATGGACATTGCTGGGATTATTCtgtgctgttttttttattttttcaagagTAAGAGATCACAGCACAAGTGAAGAAGAACCTAGTGTCTTGGCCATGAGACCTCATTCTGGGTGTTTCCTTATTTATATCCTCTCTCTTTGGTAGCATTTTGCTAGTTAAAGCTAACGCTAGCTTTGCTCTGTTTCTACTATCCCCTCTGTATAGGATTCCAGGTGAATTAAGTCATTTATATGCATCAGTTTATGTAATTTGTTCTCAAGACGCATTACAGAACATACATGAAGAGAAGTTGCTGAACACAATGCTAACAATAAATAATGCAATACATTCTGTTCAGTGATGCTAATGAATACCGCAATACATTAATTAGAATTATTCAAACTCAGACCGCTGCATGCCTCAAGATGTCAGAGGTAAAGGGTCAAGCATGATGACGAGGCAACGTTCGTCCATGTCGTGGTTAGACAGGATAAAACTACTTGGTATTTAATACAGCACATTTGTGTGAATGCCTTACAGAAGCTCACACACCCCTACATTCAACAGGCATGGTGTGAATCCATGGGCTTGGCACGAGCCAACCTACAGCGCTATAAATGTAAGCTTGTGTTCTGATGTTGGTATGTTAACACTGAGCCATAAAAGGTTAGATTGGATACGGTAATGCTACAAACAACATGTCACTTAACTTTAGCCATACTGTCTGTAAGCATATAAAGGTCTCATGAATTCCTTTAAAGCGTTGAAACAAGTGTACTCCCACTGTTTCACTAAGggatggagaaatgtaaccactcattcatagagctatggatgcaaggactgaacaCGATATAAAAATGGTAGTTTTTGCTTTGAGGTTATACAGTATTTGTTTATATTTTCAGTTCTGATGGGGTAAGAAAGTTCAacaaagctcatgaggcatttaagtTATATTCCTCAAGTTAAAAAAATGATGTAGCtactgcagatttcccctttaaaactTCTTGAATAATACAATCTTCCCTCAATTCGTAAAGTTGACATTATCTTATGTGAGTGCTTTTGAGGACATTTAACAAAAGCATTATCAACatgtaaaaatacatatttaaatgTCAATTAATTTGTTTATTTACAATAAATATTTTTGCAGTTGC

Function

GO: NA

KEGG:

id description
K09142 SPOUT1; methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422751 lncRNA downstream 63378 15694514 ~ 15707527 (-) False LOC110523302
TU422754 lncRNA downstream 76964 15693396 ~ 15693941 (-) False LOC110523302
TU422820 lncRNA downstream 84794 15685898 ~ 15686111 (-) True G372015
TU422757 lncRNA downstream 163272 15598237 ~ 15607633 (-) True G371956
TU422861 lncRNA upstream 41051 15816840 ~ 15817633 (-) True G372054
TU422863 lncRNA upstream 43195 15818984 ~ 15819222 (-) True G372056
TU422865 lncRNA upstream 45896 15821685 ~ 15821906 (-) True G372058
TU422866 lncRNA upstream 46669 15822458 ~ 15822944 (-) True G372059
TU422867 lncRNA upstream 47512 15823301 ~ 15823630 (-) True G372060
XM_021601893.2 mRNA downstream 18152 15740073 ~ 15752753 (-) True miga2
XM_021601892.2 mRNA downstream 19161 15740073 ~ 15751744 (-) False miga2
XM_021601890.2 mRNA downstream 19165 15740073 ~ 15751740 (-) False miga2
XM_021601894.2 mRNA downstream 19166 15740073 ~ 15751739 (-) False miga2
XR_002473431.2 mRNA downstream 36036 15723789 ~ 15734869 (-) False dolpp1
XM_021601902.2 mRNA upstream 120 15775909 ~ 15784714 (-) False kyat1
XM_021601901.2 mRNA upstream 120 15775909 ~ 15786123 (-) False kyat1
XM_021601900.2 mRNA upstream 120 15775909 ~ 15786129 (-) False kyat1
XM_036976912.1 mRNA upstream 120 15775909 ~ 15786131 (-) True kyat1
XM_021601903.2 mRNA upstream 10679 15786468 ~ 15788812 (-) True surf6
TU422760 other downstream 72576 15696092 ~ 15698329 (-) True LOC110523302
TU421988 other downstream 646116 15123475 ~ 15124789 (-) True G371294
TU421926 other downstream 775746 14993128 ~ 14995159 (-) True LOC110524957
TU421214 other downstream 1342314 14427338 ~ 14428591 (-) True G370635
TU420894 other downstream 1562200 14207190 ~ 14208705 (-) True G370333
TU422972 other upstream 199817 15975606 ~ 15976116 (-) True G372122
TU422973 other upstream 202713 15978502 ~ 15981215 (-) True G372123
TU424074 other upstream 1158446 16934235 ~ 16942191 (-) True LOC110523341
TU424339 other upstream 1348248 17124037 ~ 17125807 (-) True G373228
TU424730 other upstream 1713237 17489026 ~ 17521487 (-) True LOC110523354

Expression Profile