RNA id: XM_021601901.2


Basic Information

Item Value
RNA id XM_021601901.2
length 2730
RNA type mRNA
GC content 0.46
exon number 12
gene id kyat1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15775909 ~ 15786131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAGCTGAAGgagtttttaattatttttttaccccAGCTGAAGGAGTGCAGTCGGCACACTAGCACAACATCAGCGAATTGGTTGAAGACACGAACGTATAGCTCGAATTTGCAAACGTTGATTCTGTTACTTGGTCAGTTAATCATGGCACGCCAGCTACATGCTCGCAGAATCGAGGGAATTGACAAAAATATATGGGTTGATTTTACGCAGCTGGCTGCTGACTACAAGGTGGTGAATCTAGGCCAGGGCTTTCCTGACTTCTCCCCTCCAAGCTACATCCAAGAGGCCCTCTGCAAAGCAGTCAACGGAGGATGTTCAATGCATCAGTACACACATGCTTTCGGCCATCCCCCTCTTGTGTCGATCCTGGCTAAGTTCTTTGGTAGAGTCGTGGGACATGAGATTGATGCTTTCGAGGACATCCTGGTCACTGTCGGAGCCTACCAGGCTCTCTTCTGCACCTTTCAAGCCCTGGTCGATGAAGAAGATGAGGTCATCATTATTGAGCCTTTTTTCGACTGCTATCAGCCAATGGTGAAGATGGCAGGAGGAAAAGGTGTCTATGTGCCACTGAGGCCCAGAGTGGAGGGGGGCAAGGCCCTGACTAGTGCAGACTGGGTCCTATCTTCTGAGGAGTTGGCCAGTAAATTCAACCCACGCACCAAAGCCATCGTCATCAACACTCCCAACAATCCATTAGGCAAGGTGTATAAGAGGGAGGAGCTCCAAGTGATTGCTGACCTGTGTATAAAGCACGATGTGGTGTGTATCAGTGACGAGGTGTACGAGTGGCTGACTTATGACGGTGCCAAGCACGTGAAGATAGCCAGTCTTCCTGGGATGTGGGAGCGGACTGTCACGATAGGAAGCGGAGGAAAGAGCTTCAGTGCTACAGGGTGGAAGGTTGGCTGGGCTATTGGAGCAGGGCCCATTGTAAAGCACCTGAAGACCGTCCATCAGAACTCTGTGTACCACTGTGCCACGGCCGCTCAGGAGGCGGTGGCCCAAGGTTTCCAGAGAGAGTACGAGCTCTTTGGGACGCCAGAGAGTTACTTCCTGCAGCTGCCTGAGATGCTGAATCAAAAGAGGAAGAAGCTGGCGACCTGTCTGGAGAGTGTTGGCCTGCAGCCCATTCTGCCCGAGGGAGGCTACTTCATGATATCAGACATCTCCTCTCTCAAGGTTGACTTGAATGATCCAAGCACTCAGGATGAACCTCATGACTACAGATTTGTCAAGTGGCTCATTAAAGAGAAGGGTTTGGCCACTATCCCTGTCTCGGCTTTCTACAGCCCTGAGCACCGCAAGGACTTCCAAAACTACATTCGGTTCTGCTTCGTCAAGGAGGACTCGACATTGAACGCTGCTGAGGATATCCTCAGAAAGTGGAGTGACTTAAAATGAAGAAGGCACACAGACAACCCTTCCTGTTTTACCTTTATCCACCCTAGCTCAACTTAAGTCTGCTCCGTTGAACCGAGCCATATTCAACACCTCTGGATTTGTTTACACTATGTAGTACTGTAGGAATAGACCTCTAGGATGTTTTCCTTTGTCAACGTACACTGAGTGTcctgaacatcttcctaatattgagtcgcacacctttttgccctcagaacagcctcaatttgttgtgGCATGCTCTTATccaaagctttccacagggatgctggcccatgttgactccaatgcttcccaaagttgtcGATTTGGCTGGATGGCCGtcaggtggtggaccattcttgatacatatgggaaactgttgagcgtgaaaaacctagcagcgtcgcagttcttgacacaaaccggttcTCCTGGCACCTACTTTCCATAACCCATTGAGGCACTTAAacattttgtcttgcctattaaccctctgaatggcacacatacacaatccatgtctcaattgtctcaaggcttaataatcgttctttaacctttctcctccacttcatctacactgatttttgAAGTGGATGgcccatagctttcacctggattcagctggtcagtctgtcatggaaagagcagatgttcctaatgttttggacaCTGTATATCTACAATGTCATGAAGGCATATGTCGGCGTAGTCAGTCACACTCCCAGTTCTGATTGTTCTAgttggctgttttttttttttgtgtgtttttttccaaATCTGTCCTGATACGGTAGTAATCAACCACTTAGAGTAATCATCCGTCCTGCATGTATGTGATCACCATCCAGAGTGCACTATAATGTGATCACATTACTGTTGATCTGAATATTTTTGTTTAACTGCTCTGAATGACATTAATGCACATTTAAAAAATGAGACCAAGGGAAAGATGTGCATTGAATTTGCTGTCTTTGGTAGACATCACTGTATTTGATGCTGTAAGGTTCTAATTCTGAGtctccccttatcaatgcctgccacatgtAATCGCTTCCCTGCACTCAACACATTTCAAGCTTAGTTGCACAAATTAtttaccttcctcctataaccattaacttctggtgtagaccctctaaacCTCAGCACTCTCTCAGTAACATGAAGTAgatttcatattctcagaacccaacacTGTCCTTCAATCttttagttattttttattttttttgtattatcaACTGGTGGTCTACTCCTCAGAGAAATTGTCCCAAAGTGTGCTTATTTGCATAAAACTGTATGCTGATCTTGTAAAAATAAAGAGTTTTGAAGGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422751 lncRNA downstream 68382 15694514 ~ 15707527 (-) False LOC110523302
TU422754 lncRNA downstream 81968 15693396 ~ 15693941 (-) False LOC110523302
TU422820 lncRNA downstream 89798 15685898 ~ 15686111 (-) True G372015
TU422757 lncRNA downstream 168276 15598237 ~ 15607633 (-) True G371956
TU422861 lncRNA upstream 30717 15816840 ~ 15817633 (-) True G372054
TU422863 lncRNA upstream 32861 15818984 ~ 15819222 (-) True G372056
TU422865 lncRNA upstream 35562 15821685 ~ 15821906 (-) True G372058
TU422866 lncRNA upstream 36335 15822458 ~ 15822944 (-) True G372059
TU422867 lncRNA upstream 37178 15823301 ~ 15823630 (-) True G372060
XM_021601895.2 mRNA downstream 120 15770905 ~ 15775789 (-) True spout1
XM_021601893.2 mRNA downstream 23156 15740073 ~ 15752753 (-) True miga2
XM_021601892.2 mRNA downstream 24165 15740073 ~ 15751744 (-) False miga2
XM_021601890.2 mRNA downstream 24169 15740073 ~ 15751740 (-) False miga2
XM_021601894.2 mRNA downstream 24170 15740073 ~ 15751739 (-) False miga2
XM_021601903.2 mRNA upstream 345 15786468 ~ 15788812 (-) True surf6
XM_021601906.2 mRNA upstream 5388 15791511 ~ 15795413 (-) True rpl7a
XR_005051942.1 mRNA upstream 7521 15793644 ~ 15793713 (-) True LOC118964749
XR_005051941.1 mRNA upstream 7904 15794027 ~ 15794103 (-) True LOC118964748
XR_005051940.1 mRNA upstream 8221 15794344 ~ 15794415 (-) True LOC118964747
TU422760 other downstream 77580 15696092 ~ 15698329 (-) True LOC110523302
TU421988 other downstream 651120 15123475 ~ 15124789 (-) True G371294
TU421926 other downstream 780750 14993128 ~ 14995159 (-) True LOC110524957
TU421214 other downstream 1347318 14427338 ~ 14428591 (-) True G370635
TU420894 other downstream 1567204 14207190 ~ 14208705 (-) True G370333
TU422972 other upstream 189483 15975606 ~ 15976116 (-) True G372122
TU422973 other upstream 192379 15978502 ~ 15981215 (-) True G372123
TU424074 other upstream 1148112 16934235 ~ 16942191 (-) True LOC110523341
TU424339 other upstream 1337914 17124037 ~ 17125807 (-) True G373228
TU424730 other upstream 1702903 17489026 ~ 17521487 (-) True LOC110523354

Expression Profile