RNA id: NM_001160625.2


Basic Information

Item Value
RNA id NM_001160625.2
length 1259
RNA type mRNA
GC content 0.46
exon number 9
gene id c5h9orf78
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15810578 ~ 15814802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTATTATTGTTGGCAAAAGAGCATCTGCGTACACTGTAAAGTCGTGTACACAACGTTTGCTACCATCCTTTCGAAAACTCTACAATAATGCCGTCGGGAAAAAACTTTAGAAGGAGAAGGGAAAGCTCTTCGGATGAAGAGGAAGACGAGATAACAGCTGAAGTTAGATCGAAACTGGACGAAGCTAAAGAACTTCAGAGTTTACGGAAAAGACAGACTGGAGTTAGCGTGGCCGCATTGTTGGAGGGGGAGAAACTTCGCTTGGACGAAGGGGGTGATAATGACCCTTTTAAATTGAAGACAGGGGGGGTTGTTGACATGAAAAAAGTTAAAGACCGGGCCAGAGACATGACCGATGACGACACAGGGGACCTTAATCTGGGCACCTCTTTCTCTGCCGAGACCAACAGACGAGATGAAGATGCCGACATGATGAAGTACATTGAGACAGagctgaagaagaagaagggctTGGTGGAAGCGGAGGAGCAGAAGGTAAAAGTGAAGAACGCTGAGGACCTCCTGTACGAGCTGCCGGAGAACATCCGAGTCAACTCGGCCAAGAAGACTGAAGAGATGTTGTCCAATCAGATGCTGAGTGGGATCCCCGAAGTTGACCTTGGCATTGATGCTAAGATAAAGAACATCATCTTCACAGAAGAGGCCAAGGCCAAGCTGCTACAGGATCAAAGGAACAAGAAGAAGGACAACGGTACCTCCTTCGTCCCCACCAACATCGCTGTCAACTACGTCCAGCACAACCGCTTCTACCGTGAAGACGTGAACGCCCCACAGAGACACCACAACAGACACAAACCAAAGGAGCCAGAGGCCAGGCCTCTTCGTGTGGGTGACACAGAGaaaccaggaccagaggCTGTGGAACCAGCCAACCATCGTAAGAGGCCTAACAACGAGAAGGCCACGGACGACTACCACTACGAGAAGTTCAAGAAGATGAACCGTAGATACTGAGGATAGATTTGCCCTTTGACTGGAATTTGGATAATCTCCATTGAACATGATTTTTAGTCTAGGGCTAGGCTTAGTTTTTCCTTTAGAAAAACAAATCTATGCCCATTTGTATAAATAGCCCCTTCTGCTTTTTGTTTCCagcttttgttgttttgtctggGACTCGATTGATGTAGTGTATTCTATCAATAGCATGTGAAATGTCATACATCTGAATTATTTGATGTCATTCCATCCTTGGTTTCTACAATAAATGTACCATGTTCTCTTTGACATTTGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422751 lncRNA downstream 103051 15694514 ~ 15707527 (-) False LOC110523302
TU422754 lncRNA downstream 116637 15693396 ~ 15693941 (-) False LOC110523302
TU422820 lncRNA downstream 124467 15685898 ~ 15686111 (-) True G372015
TU422757 lncRNA downstream 202945 15598237 ~ 15607633 (-) True G371956
TU422861 lncRNA upstream 2038 15816840 ~ 15817633 (-) True G372054
TU422863 lncRNA upstream 4182 15818984 ~ 15819222 (-) True G372056
TU422865 lncRNA upstream 6883 15821685 ~ 15821906 (-) True G372058
TU422866 lncRNA upstream 7656 15822458 ~ 15822944 (-) True G372059
TU422867 lncRNA upstream 8499 15823301 ~ 15823630 (-) True G372060
XR_005051943.1 mRNA downstream 15041 15795463 ~ 15795537 (-) True LOC118964750
XM_021601906.2 mRNA downstream 15165 15791511 ~ 15795413 (-) True rpl7a
XR_005051948.1 mRNA downstream 15369 15795141 ~ 15795209 (-) True LOC118964755
XR_005051949.1 mRNA downstream 15771 15794739 ~ 15794807 (-) True LOC118964756
XR_005051940.1 mRNA downstream 16163 15794344 ~ 15794415 (-) True LOC118964747
XM_036976901.1 mRNA upstream 57976 15872778 ~ 15895178 (-) True LOC118964568
XM_036976918.1 mRNA upstream 83875 15898677 ~ 15899294 (-) True LOC118964569
XM_036976899.1 mRNA upstream 87414 15902216 ~ 15926643 (-) False LOC110523317
XM_036976900.1 mRNA upstream 87414 15902216 ~ 15926643 (-) True LOC110523317
XM_036976922.1 mRNA upstream 124149 15938951 ~ 16084523 (-) False garnl3
TU422760 other downstream 112249 15696092 ~ 15698329 (-) True LOC110523302
TU421988 other downstream 685789 15123475 ~ 15124789 (-) True G371294
TU421926 other downstream 815419 14993128 ~ 14995159 (-) True LOC110524957
TU421214 other downstream 1381987 14427338 ~ 14428591 (-) True G370635
TU420894 other downstream 1601873 14207190 ~ 14208705 (-) True G370333
TU422972 other upstream 160804 15975606 ~ 15976116 (-) True G372122
TU422973 other upstream 163700 15978502 ~ 15981215 (-) True G372123
TU424074 other upstream 1119433 16934235 ~ 16942191 (-) True LOC110523341
TU424339 other upstream 1309235 17124037 ~ 17125807 (-) True G373228
TU424730 other upstream 1674224 17489026 ~ 17521487 (-) True LOC110523354

Expression Profile