RNA id: XM_036976907.1


Basic Information

Item Value
RNA id XM_036976907.1
length 5201
RNA type mRNA
GC content 0.50
exon number 25
gene id usp20
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15816800 ~ 15839459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCATAACAACACTGACGTTAAACCAGTGTGTGAGTTGGGCGGGGGAGCAAGTGGGATGGGGTATCTATCTCTATTCCGTACAACAGCCACAGTAGCTAGCCAGGATACCATCGCTAGCTAGCTAGATCTTTAGAAGAAGTTGAATAAACATGAGTGACCTGGGGGACATTTGTCCCCACCTGGAATCCATAGGGGAGGTCACCAAGGAGGACCTTCTGCAGAAATCCAAGGGAACCTGCCAGTTATGTGTAGCAGGAGGACCCAACCTCTGGGCCTGTCTTCAGAGCGAGTGTCCATATGTTGGCTGTGGAGAATCCTTTTCAGATCACAGCACCCTACACGCTCAGACTAAGAAACACAGCCTGACAGTAAACCTGACAACATTCAGGATCTGGtgctatgtgtgtgagagagaggtgtttcTAGAGCAGAGGCCTGCAGTAGTATCTGCTATGTCTGCCACTAACACTCCCCACCACTGTAAAGCTATGGACAACCAGGATGCATTTCATCAACCAGTGAGTCACCACCGCCCGTTGAAGGCGGTGCCCATCGCGGTGGCAGAAGAAGAGGGGTCAGAGTCGGAGGAGGATGACCTCAAACCCAGAGGTCTGACAGGGATGAAGAATATCGGTAACTCCTGCTACATGAACGCAGCTCTTCAAGCCCTGTCCAACTGTCCTCCTCTCACTCAGTTCTTCCTGGACTGCAGTGGACTGGTGCGGACAGACAAGAAACCTGCGCTGTGCAAGAGCTACCAAAAACTAATCTCTGAGCTCTGGCACAAGAAACGgccCAGTTACGTGGTCCCCACCAGTTTGTCCCAGGGAATCAAGCTGGTCAACCCCATGTTCCGTGGCTACGCCCAGCAGGATACCCAGGAGTTTCTGCGCTGTCTGATGGACCAGCTCCACGAGGAGCTCAAGGAGCCATTGGCAGAGTTCGGCAGGGGGGGTGAGGGGGACGAGCGGAGGGACGGGAGCGACCGCTCCCCCGCCGAGGACGAGTTCCTCTCCTGCGACTCAGGTGCCAGCAGCGAccggggagaaggaggagggctgggggaggCGGGGCTGCTCATCCAGGATGAGTGTGGGGTGTCACCgagggtgggaggaggggagacagGCACTGGGGGGCGATCAGGGACAGGAGGACCCATCTCGGAGAAAGAGAGGCTGAAGGAGAAGAGGGTTTTGGGCTCGCCCCTCCACGGAGGCTCCCAGGAGATGGACGAGGACGCAGATGTGGATACGGCGGCGGCCGAGAAGGGGGCTCTAGAGAGgggggcggaggaggaggaggggacccCCCCTAGACCACAGAGCCCCAGTCAGAGTCAAACACAGGGGCAGATGCAGAGCAGCAACACTCCAGAGCCAGACAACGAGGCATCGATGCAGCAGCGCCCCCAGTCTCGCCCCTGCAGCCCTGTCCGTATGGTCCAGGAGCTGCAACCAAAACTCTCCTCTAGCCCCCCTCGCTCTAGCACCCTCCGCTCTGCAGGGCCCACATACTCCTTCAAGAAAGCCCAGCTGATCCTGGGTGCCAAGAAGAAGAAACAGTCTCTCTACCGCAGTGTCATCTCAGATATATTTGACGGCTCCATCCTCAGCCTGGTCCAGTGTCTGACTTGTGACAGGGTTTCGACCACTGTGGAGACCTTCCAGGACCTGTCTCTGCCCATCCCAGGTAAGGAGGACCTTGCCAAGCTACACTCCTCCATCCACCAGAACATCCCAGCCAAGACCGGGGTCTCTCTGGACGTCTACGGCTCCCAGGGCTGGATCACCTACATCATGGACTCCATACGCAGGTTTGTGGTGTCCTGTATCCCCAGCTGGTTTTGGGGCCCCATGGTAACGCTGGAGGACTGTCTTGCTGCCTTCTTTGCTGCTGATGAGCTCAAAGGGGACAACATGTACAGCTGTGAAAAGTGTAGAAAATTAAGAAATGGTGTTAAATATTGCAAAGTACTTCAGCTACCTGAGATTCTGTGCATTCACCTGAAGCGTTTTCGTCATGAGGTGATGTACTCCTTCAAGATCAACAGTCACGTGGCCTTCCCATTGGAGGGACTCGACCTCCAACCTTTCCTGGCCAAGGATAGCCTCTCCCAGATCACCACTTACGACCTGCTGTCCGTCATCTGTCACCATGGCACCGCAGGCAgtGGTCACTACATAGCGTACTGTCAGAATGTGATCAACGGTCAGTGGTATGAGTTTGATGACCAGTATGTAACAGAGGTCCATGAGACGGTGGTGCAGAATGCTGAGGCCTATGTGCTCTTCTACAGgaaGAGCAGTGAGGAGTCAGTGAGGGAGAGGCAGAAGGTTGTGGCTCTAGCCAACATGAAGGAGCCCAGCCTGCTGCAGTTCTACATCTCCAGAGAGTGGCTCAACAAGTTCAACACATTCACTGAGCCAGGGCCCATCAGCAACCACACCTTTCTCTGCCAGCACGGAGGGATCCCACCCAACAAGTACCACTATATAGACGACCTGGTGGTGATCCTGCCGCAGAATGTATGGGAGTACCTGTACAACAGttTTGGAGGAGGCCCAGCAGTGAACCACCTGTACGTGTGTGCTATCTGCCAGGTGGAGATAGAGGCTCTGGTCAAACGCAGAAAGGTGGAAATAGACACCTTTATCAGGTTGAATAAAGAGTTCCAGGCGGAGGAGGCTCCTACAGTCATCCTGTGTATCAGCATGCAGTGGTTCAGGGAGTGGGAGAACTTCGTCAAGGGCAAAGACAACGAACCCCCTGGTCCTATTGACAACAGTAAGATTGGTGTGATGAAAGGGGGACACATACAACTAAAGCAAAgGGCTGACTATGGTCAGATCTCAGAGGAGACGTGGCAGTATCTTCTCAGTATCTACGGTGGAGGGCCTGAGActgcagtgagacagacagtgtcggCCCCGGCCCTCGACACAGACAGCctgcacagagagaggaagatagaggcAGAGACCAGGGCACTCTGAGAAACACCCACAATGgtcatctgtctgtctgactcctaCACCTGGGTGAAGATAAGCACCTGGGTGAAGAGAAGAACCTGGGTGAAGAGAAGCACCTGGGGGAAGAGAAGCCTTGTCAGGAGCACTTTGTAAAACGTAGCAACGCGCCTCATTCTATTACCAGTGCAGAAGGACATAGTTGTCAATTATCATCCTACCGTAGTGAAAAGGTCTTATTTATTGAATAAATCTTAAAAAGATTTCTAAGTGAAAAATGTAACATTGCGTGACACCATGTTTCTGATGCTGTTAGCAGCTATGGTTGGTTAAGTCTAAATCTAAAGAGCTGCTGTACCAGTGTAGTAGGTGTGTCATCATTAAAGGTGTTCAGATGAGAAGTGGAGGGAGGTAGTGGTGTTTGGGACCATGATGCCAAGGAGTGTGACATCGTCAGTGTTAATCGCTGCTTGAAGACTCGGGTCAACATGTACATTCTTCTCCACACAGGACATTCAGTGACGACACGGCGCCCATTCATTTCTCTTTTCACGAGACAACAGAAGGACTGATGTAAAAATAACACATGTAAAGAAATAAAGTATGTTCAGAGTTGAATGTTCTGCTTCTTTCCGAGGAGGACTACAGTGTTTTCCGATTGGCGTGACTCGTGCCGTCTCATCGCATAGTCAATTGACGTTACAATTGATTTGTTTAAGTCATACAGATTAAAGCTCATCCCATCAAGACCCCCTAATATTGTGTTTACAGACAGTAGGAACAAGCAGATGAGGGGATTCTCGCAGCAGAtctacaggggaggagaggacccTCAGGAGAGTAGCCCCAGGTCAGGATATCAGGCTagcagggaggaaagagaggggggtccAACCCCCAGTCCCCCtgcagggatagaggtagaggtgaCCAGTGTGGAAGAGTGCGAAGGGCTATATCTGTCAAATCTCTATCACGTCTCGTACTTCTCCCCAGCTCCATATCCCAGAATTCAACACTCCCCCAGGTCACTAGCCTGCACCAGCCTGCACTCGTCTCTCTGCTTGGGGAAATATCATATTCACCCTTATCCCTCTTACCATAAAGGTTCATTAACCTGCAGTGTGCATGTTAGTACTGCACGCTAACACAGATGTTGAAACTTGTTTTCCTTTTCTTTGGTATCGGTTGGCAGGAGGATGTTGTTGTGTACCCTCTTAgtaaaaagggttccaaaagggttctgaggctgtccccataggagaaccctttttggttccaggtagaactcttttgggttccatgtaaaaaccagatggaacccaaaaaggttctacatggaacccaaaagggttcttcaaaggcttatcctatggggactgctgaagaacccttttgggttctagatagcacctttttttctaacaaTGTATAAGAGGGAGATGATGTAATCCAAGCGGGCATGTCATTATGAGCTTCACCTGAGTTCTGATTCCTTCAGAATGCCATCTAGCCATTTAAATGTTAACTAACATACGTTCAAGTGTGTCTGTCTGCTGTAGCAACGCTATGTAAAGGATGCTGAATGACAGTGTTGGAACCTAAATGTGAAAAGAGAAGTAAatgttctttctttttttttatatatattttttggtattCCTTTGTTTTTGCCAATTCTGTAAAGAAGTGAAACCTCCAAGTGTTTTTGCAGAGAAGTGCAATGAAAACCTTTGACGGTCTATCTGTGCTCAGACATCttagtttttattattattataggttGCCAATGGGTTGCTGAAGCGTTGTAACTTAGTTATGACAGCTGACTATACAGTGAGGGTCCCTGTGGTACATTCCAGCGGTCTGTGATTATTTTCTCAATTCACCTCTGAATTCCTGGTTTGTGTGTCTACGTTGGGTTGTGTACACTCACTTGCGTGTAAGCGTTTCATTTTCACTGGTAAATGGTTGAACATAAAGATGTTGCTGTGGTGGGATTGGTTGCATAGGTAATGACTCGCCTCATATCTTTTTCCCAAAACAATAATAGGAGTTAATCAACTGCTGTTTTTCAATgacgagagagagtgtgtcataGTGATGGTGATCTTTTGTTGCTATTTGACTTCCGTGGTTGATCCACACTCAGATGATTGTCTGGGATTGTCTGGAAAACAGATGTAATTATAAATGATTATATGATTAAAAGCCTGCTCTATCTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422370 lncRNA upstream 1051 15815205 ~ 15815749 (+) True G371632
TU422350 lncRNA upstream 23176 15791559 ~ 15793624 (+) True G371615
TU422343 lncRNA upstream 102205 15714329 ~ 15714595 (+) True G371612
TU422341 lncRNA upstream 103599 15712970 ~ 15713201 (+) True G371610
TU422323 lncRNA upstream 118109 15690051 ~ 15698691 (+) True G371598
TU422377 lncRNA downstream 11911 15851370 ~ 15851721 (+) True G371639
TU422392 lncRNA downstream 30314 15869773 ~ 15870026 (+) True G371653
TU422395 lncRNA downstream 47779 15887238 ~ 15916078 (+) True G371656
TU422407 lncRNA downstream 54916 15894375 ~ 15899296 (+) False G371661
TU422408 lncRNA downstream 54916 15894375 ~ 15899296 (+) True G371661
XM_021601907.2 mRNA upstream 6298 15796178 ~ 15810502 (+) True med22
XM_021601908.2 mRNA upstream 14586 15796177 ~ 15802214 (+) False med22
XM_021601905.2 mRNA upstream 25772 15788795 ~ 15791028 (+) True LOC110523312
XM_036976914.1 mRNA upstream 44774 15756307 ~ 15772026 (+) False st6galnac6
XM_021601910.2 mRNA downstream 13110 15852569 ~ 15858360 (+) True ptges
XM_021601919.2 mRNA downstream 594804 16434263 ~ 16437732 (+) False LOC110523326
XM_021601920.2 mRNA downstream 594816 16434275 ~ 16437732 (+) True LOC110523326
XM_021601922.2 mRNA downstream 615136 16454595 ~ 16470342 (+) False LOC110523327
XM_021601924.2 mRNA downstream 615136 16454595 ~ 16470342 (+) False LOC110523327
TU422347 other upstream 21678 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 687983 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 763244 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 1011329 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1448639 14367672 ~ 14368161 (+) True G370414
TU423147 other downstream 380147 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 896183 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1030975 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 1030975 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 1864654 17704113 ~ 17707757 (+) True G373726

Expression Profile