RNA id: XM_021601940.2


Basic Information

Item Value
RNA id XM_021601940.2
length 2401
RNA type mRNA
GC content 0.47
exon number 16
gene id pargl
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16516800 ~ 16557705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATGTCCCTCACACACCCTACACAAGGCTAGCGACTGACTTTTCTCCTCGCCCCTAGACCATAGTAGCTGATCATTACAGAAGGAGTCATCGAGAGAGATGTCACCCCTGCCTCCACGGTGACGTCGGTTCGGTATGGCCGATCGTAACGACAGTTGCCAAATGAAAGCTGTCATGCAGAATGACGCCGCCATGCAGAACAAGAACAGGGATCAGGGGGTTAAACGCAACCCAAACGGAGAGGTCCCTGTTGGAAACCTGGTCGACATTGACAAAACTTCGGTCACCAAATCACtgcacagagacagtgagagagaaagggagaaagagggggatggaaAGGCGGGTGGAGTAGGGGACGCAAATAGCGGGAAGGATAGAGGAAGGAAAAGAGACACGGAGGGAgcgaggggtgaggaggagaagaggtcgTGCTGCTCTCAGAAGCTGAAGAAAGTCCCTCAGTGTCACGTGGAGCTGGAGCAGCTGTCCTTCAGCAGAACTCACAACGTCCTCATAGATGTGAATGAGTTCCACCATAAAAGGACATTAAAACCTCATTCTGGACGGCATGTGTGGCACAGTGACTTTGTTAAGATGCCCTGCTCACCAGAAAGCCTCATCAAGACTGGATGGGTAACCAGCTCTGAGCGAAGTCGGTGGGAGGTGGTCTCTAAACAGCTGGAGAGTCTGGCCAAGAAGACCACTGCATCAGTGGGTGACGTAGAGAAAGCCATAAAGAAATACAACCCAAAGTATGAAGATCAATGGTCCTTTGATGCCCTGCATACCTTTGTTCAGAAATCACCCAAAGAAGAGAAATTCTACATGTCTGTTTTTCCTAAGATAGCAGAGCTGGCTTCCAGCCTGCCTCACTATATCAAGAAGgctatccCTCTACTCAAGAAGGGCCAGACTCAGTCTATCACGTTGTCCCAGAGTCAGATAGCTTGTCTGCTGGCCAACGCCTTCTACTGCACCTTCCCCCACCGCAACTCTCCCAACCCCAGAGCAGAGTACCACAACTACCCCACCATCAACTTTAACAGtCTGTTTGAAAAGTGgtctgagaggaagagagagaagctgAGAGCCCTCCTTCATTACTTCCACACTGTCACAGACCCAGCGACCAGGCCCAGTGGACTGGTGACCTTTGAGAGGCGCTacatcagagacagagacatgcccCACTGGGGGagttGTAAGGAGACTGTTCCTAAACTCCACGTCAGCTCAGCAGGCTGCATAGAGGAACAGGGAGCAGGGATGTTACAGgtggACTTTGCCTGTAACATGATAGGAGGTGGAGTGTTGGGCTCAGGTCTGGTTCAGGAGGAGATTCTGTTCCTGATGAACCCTGAACTCATCGTATCTCGACTCTTCACTGAGAAACTAGGAGACAATGAGTGTCTCTTcatcacaggttctCAACAGTTCAGTCATTACAGTGGCTACAGTGACACTTTTAAGTGGGAAGGGCCTCACAGAGACAACTTTAAGAGGGATGAGTGGCAGAGGCTACACAGACAGATTGTGGCCATGGATGCTCTCCACTTCAGACACCAGAGAGAACAGTACAACATGAAACAGGTCACCAGGGAACTCAACAAGGCGTACTGTGGCTTTAAGGCAGATGACAACACTTACCCAGACTTCCTTCCTGACATCGCCACGGGAAACTGGGGCTGCGGAGCCTTCAATGGAGACCCCAAACTTAAAGCTCTGGTCCAGCTGATGTCTGCAGCCAGGGCCAAGAGGGGCGTGGCCTTCTTCACATTCAATAACTTAATCTTGGAGAGAGAGCTGCAGGACATGCACCACCTACTGGTCACACACAGAACTACAGTGGgTGAGCTGTATGAGTTGCTGGTTGACTACTGTGCTGTGATACAGTTGGCTCACACACATGCGGACCTGTTTGACTGGATCAGGAATACCCTGAAACACAGGAGTCAGCTGTGAGGACACATCTACATACTCTAAAGgagcttcctttccttgtctccattcattttttaacattattgagatgcaccccagaGATAGAGTGGCTCTATGAATGATCTGTGGATAGAAACATGGTACAGTTCCAAGTAATGGTTGATTATGAATGTGTTTGTCTTTTCAATAGTTACACTGTTCCTAAATCAAACTGATACATTTGTAACTACTGCATACTGAACTATTTAGAAAACGACTAAATGTGATGATAAAACAAAGCTAATGAAATGATGTCAACAAAATCAGGGGTCCTGCTTTTTGATTTGTCCCTTGATGATAGCCAACAATTTAACCATCAccagtcatatatatatatacatgcagtgtactgtaaaatactctaaaattataatttttttcttTAAACATTTTGAATAAATTCCTCTTTATAATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU423246 lncRNA upstream 37398 16476526 ~ 16479402 (+) True G372374
TU423253 lncRNA upstream 41215 16401132 ~ 16475585 (+) True G372380
TU423215 lncRNA upstream 161488 16355092 ~ 16355312 (+) True G372345
TU423212 lncRNA upstream 163560 16353024 ~ 16353240 (+) True G372342
TU423203 lncRNA upstream 181247 16335185 ~ 16335553 (+) True G372333
TU423254 lncRNA downstream 951 16558656 ~ 16559057 (+) True G372381
TU423361 lncRNA downstream 15139 16572844 ~ 16573465 (+) True G372480
TU423386 lncRNA downstream 49627 16607332 ~ 16607737 (+) True G372505
TU423387 lncRNA downstream 51797 16609502 ~ 16609777 (+) True G372506
TU423399 lncRNA downstream 52191 16609896 ~ 16615044 (+) False G372507
XM_021601922.2 mRNA upstream 46458 16454595 ~ 16470342 (+) False LOC110523327
XM_021601924.2 mRNA upstream 46458 16454595 ~ 16470342 (+) False LOC110523327
XM_021601925.2 mRNA upstream 46458 16454799 ~ 16470342 (+) False LOC110523327
XM_021601921.2 mRNA upstream 46458 16454801 ~ 16470342 (+) True LOC110523327
XM_021601919.2 mRNA upstream 79068 16434263 ~ 16437732 (+) False LOC110523326
XR_005051667.1 mRNA downstream 133200 16690905 ~ 16693430 (+) False LOC110523336
XM_036976935.1 mRNA downstream 154477 16712182 ~ 16726009 (+) False polm
XM_036976936.1 mRNA downstream 154479 16712184 ~ 16726009 (+) True polm
XM_036976947.1 mRNA downstream 174931 16732636 ~ 16735129 (+) True ved
XM_021601952.2 mRNA downstream 183648 16741353 ~ 16744067 (+) True purbb
TU423147 other upstream 295867 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 721678 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 1387983 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 1463244 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 1711329 14804661 ~ 14805471 (+) True LOC118964542
TU423245 other downstream 177937 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 312729 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 312729 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 1146408 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 1509738 18067443 ~ 18083365 (+) True arhgef28a

Expression Profile