RNA id: XM_036976935.1


Basic Information

Item Value
RNA id XM_036976935.1
length 3103
RNA type mRNA
GC content 0.47
exon number 11
gene id polm
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16712182 ~ 16726009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGGTGGTTGTCCAACATTGACTTGATGAGACATGTATGTCATCGTGGTAGCAAGACAGCagcacacttttttttatttaaccatgcaagtcagttaagaacaaaatattatttacggcctaccccggacgacgctgggccaattgtgcgccgcccaatgggactcccaatcacggccggatgtgatacagcctggatttgaaccagggacctcttgcactgagatgcagctgCGCCAGTCGGGAACCCAAGATACTggtcaattaaattcaaggggctttattggcatgggaaacgtgttaacattgcatAACATTAAATTGTCACTAtccgtacagtaggtggcggctaTACATCAATAGGCGTAGTCTGCCATAAAACCTtaaggaagaagaagaagcacaCTCGCGAGAATTATGAACCGTTGCTCATGTATCTGTTGTCGGTTTTATAGACAGATGAGCGAGTCTGCCAACAAATATGGTCCCTCTAAAGCGCAGGAAAGTGAACTGCTCCGTTACAAGCGACAGCAGCGGTGACAGGACCAGCAAGTTTCCCGGGGTTGTCATCTATCTCctggagagaaagatgggagcCAGTCGGAGAGCCTTCCTCACTCGGCTCGGCCGGGGGAAAGGTTTCAACATAGAATACTCCTTAAGCTGTTCCATCACTCATATCGTGTCCGAGAATAATTCTGGGGAGGAAGTCCGGACTTGGCTGGACCTCCAGactggaggacaggggagagaagggggagaaggcaGGACAGCCCGACCTGGTTCAGTCCATCTCCTGGACATCGTTTGGTACACAGAGAGCATGCATGCTGGCATTCCCGTGATTATACTGGACAGACACAGACTACAGgagagagagaagcctgGTTTGGAGCTGGCAGTGGTCTCAGTACCCAGCTATGCCTGTCAGAGACACACCCCTCTACTGCACCACAACATAACACTGACCGATGCGTTGTCCATACTGGCTGAGAATGCGGAGCTCGGTGAAAACGAGGGACGGGGAGTGGCGTTCCGTAGGGCGGCAGCCTTGTTGAAGTCCCTCCCCCAGGAGGTCAGAGGGGCAGAGCAACTACGAGGACTGCCTTGTCTGGGGGAGCACTCACTCAGAGTCATCAAGGAGGTTCTGGAGGATGGTGTATCTCATGAGGTGGAGACCACCACGCATTCAGAACAGTTTAAGGCCATGAAGTGTGTGTTTCAGGCCCTAACAGGTATTTTCGGGGTAGGGGCGAAGACAGCCGACCGTTGGTTCAAGGAGGGAATACACACCCCCTCCGACCTGCAAAGATCAGGACACACACTCAACAGAGCGCAacgagcagGTCTGCAATATTATGACGAACTGAACCTGCCTGTCACAAAATCAGAGGCTGTTGCAATTGGTCAGATTGTGGAGAGGGCGGTCCATGCTGTGCTCCCGGGGGCAGAGATCACTCTGATTGGAGGATTCAGGAGAGGTAAGCAGACTGGTCATGATGTGGACTTCTTGATAACCCATCCTGAcgagggcagagaggaggggcTCATGCCTAAGGTGGTGTCCTGGCTTGAagcacagGGCTTCCTGTTGTACCAGAAGACCACTGGGAACTCTTATCTGGAGAGCAAAGAGGGTCCTGCGAGGCCAGCCTCTAACATGGACCGCTTTGAAAGATGCTTCTCCATCTTTAGACTGAGCACAGACAACGAAGGGAGGGAGATCCAGACGGGGAATGGTCCACAGACATACTCACCGACACTGACCAATACAGATCCACACACCCACTCCGAGTCTCCTCACCCACTTCCCCAGACCCTTGTGGTGGTGGGTGACCATGCCCAGAAGGTGAGCTGGGTGCTGGGTCATTCTCAGTGCTCAGGTCCCCGGTCCTGGAGAGCAGTGAGGGTAGACCTGGTGGTCTCTCCATACAGCCAGTTTCCCTTCGCATTGCTGGGCTGGACTGGATCGAAGtTGTTTGAGAGAGAGCTGCGTCGCTGGGCAGTACATGAGAAGGCCATGACTCTGAGCAGCCATGCTCTGTACGACAGAAAACGGACGCTGTATCTAAGGGCTAGTTCAGAGGAGGAGATCTTTGCTCATCTGGGTCTGGAATATATCCCTCCCTGTGACCGGAACGCTTGACGACAACATCCTGGACTGATAACAGATACAGTCTAAGAGCTAAGCAAACCCACGCTAAATTAAACCTAAACATAAGCCAAATCAAACTAAGCCTTATCCCGAGAACAACACACAGGCCAGATACAGCCTAGGGTAGACAAGAAGGGGGGGGTGAGAGGTGGATAGACGGTTACATATCTGTATTTTATTAAATTGTAAATAATAAAAAACATACAGACCCAGGATGTTGTAAAGTACCAAATCTATAGATGTGTTTAATTTAGTTAACTAAATTAAAATAACGTAACTACTCGAGCCATTAATTGTACAGTATGTGCTTTTTTTTCATATCTGACATAGATCATAGATCATTTTCTTTCATTGGTGCCTTCTTATTGAATACGTTTTTAATATTTACTGCAATTTGTCTGCTTGTTTGTAATATTTAGAATGCAGTTAAACTATGTGAATTAAAATGATATCAATCATTTTAGACTTACCAAAAAGCTTTTGAAATGTGACATAATGTAGGCCTAAAACTGCGTGCATTCTGAGGGATGCTTAAATAAGTGCTTAAATATATGCATGCCCTCATgcagtgtgtgtggttttgttACATTTTGCATGATGACAGCAGTGGCCTATTTACACAGCAGGTGtacgctacacacacaccaccatccaACTTACGGTCTCAGAAATAGAAACATTAGGTACAAAATACGTTTTTAAAAATGGCAAAAAATGACACACACGTAGCATAATTGGTTAGGGgatcgtaaaacggcagccatctccttcggcgcaggtgacaaataaaatgGGACTCTATTACCTCTCATGACATGTTTGTACATtgctatatgtatatacagtgtaccATGTTATATATTATCAATTTATGCATTGTGGTGGTTTCTGTGTGTACTCTTGTTTTTAGTTGACAGAAATAAAACTCCCCTATTATTGAATGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU423248 lncRNA upstream 17631 16690958 ~ 16694551 (+) True LOC110523336
TU423481 lncRNA upstream 23197 16624136 ~ 16688985 (+) True G372513
TU423488 lncRNA upstream 72287 16637303 ~ 16639895 (+) True G372518
TU423457 lncRNA upstream 97138 16609896 ~ 16615044 (+) False G372507
TU423244 lncRNA downstream 9633 16735642 ~ 16738220 (+) False G372373
TU423530 lncRNA downstream 25235 16751244 ~ 16752267 (+) True G372560
TU423542 lncRNA downstream 45401 16771410 ~ 16773528 (+) True G372570
TU423570 lncRNA downstream 83922 16809931 ~ 16810186 (+) True G372589
TU423578 lncRNA downstream 97019 16823028 ~ 16823918 (+) True G372597
XR_005051667.1 mRNA upstream 18752 16690905 ~ 16693430 (+) False LOC110523336
XM_021601940.2 mRNA upstream 154477 16516800 ~ 16557705 (+) False pargl
XM_021601938.2 mRNA upstream 154477 16516813 ~ 16557705 (+) False pargl
XM_021601937.2 mRNA upstream 154477 16524237 ~ 16557705 (+) True pargl
XM_021601925.2 mRNA upstream 241840 16454799 ~ 16470342 (+) False LOC110523327
XM_036976947.1 mRNA downstream 6627 16732636 ~ 16735129 (+) True ved
XM_021601952.2 mRNA downstream 15344 16741353 ~ 16744067 (+) True purbb
XM_021601959.2 mRNA downstream 223393 16949402 ~ 16967809 (+) True LOC110523342
XM_021601962.2 mRNA downstream 269385 16995394 ~ 17012011 (+) False st8sia5
XM_021601963.2 mRNA downstream 269387 16995396 ~ 17012011 (+) True st8sia5
TU423147 other upstream 491249 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 917060 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 1583365 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 1658626 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 1906711 14804661 ~ 14805471 (+) True LOC118964542
TU423245 other downstream 9633 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 144425 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 144425 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 978104 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 1341434 18067443 ~ 18083365 (+) True arhgef28a

Expression Profile