RNA id: XM_021601959.2


Basic Information

Item Value
RNA id XM_021601959.2
length 6115
RNA type mRNA
GC content 0.51
exon number 39
gene id LOC110523342
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16949402 ~ 16967809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGTACCGACGCAGAGATGGCTTCTTATGGCAAAGCCGGTGTATACCTCCGTAAGCCTGAGAAGGAGAGGATTGAGGCCCAAAGCCAGCCCTTCGATGCAAAGAATGCCTGCTATGTGACCGATGTTAAGGAGCTGTACCTCAAGGGTACCATTGTTGGCAGAGAAGGGGGAAAGGTCCAAGTGAAAGTCCTTGACACTGGGGAGACTAATGACTTCAAAGAAGCCGATGTCTTCGAAATGAACCCTCCAAAGTTTGACATGATTGAGGACATGGCCATGATGACCTACCTCAATGAAGCCACTGTCCTGTATAACCTCAAAGAGCGTTATGCAGCATGGATGATCTACACCTACTCTGGGCTCTTCTGTGCCACGGTGAATCCCTACAAGTGGCTCCCTGTGTATGACGAAGAGGTTGTTAACGCTTACAGAGGAAAGAAGCGCATGGAGGCTCCACCCCAtatcttctctgtctctgacagGGCCTATCAGTTCATGTTGACGGATAGGGAGAACCAGTCTATCCTGATTACCGGAGAATCTGGTGCAGGAAAGACTGTCAACACCAAGCGTGTCATCCAATACTTTGCCACCATTGCTGTGtctggaggagaaagaaagagggcgGCAGAACCCGGCAAAATGCAGGGGTCTCTTGAAGATCAGATTATTGCTGCCAACCCTCTGCTGGAGGCTTACGGTAATGCCAAGACAGTTCGAAACGACAACTCTTCTCGTTTTGGTAAATTCATCAGGATTCACTTCCACAGTAATGGCAAGCTGTCTAGTGCTGACATTGAGACCTACCTGCTGGAGAAGTCCAGAGTGACCTTCCAGCTGCCCGATGAGAGAAGCTACCACATATTCTACCAGATGATGACCAACCACAAGCCTGAGCTGATTGAAATGACGCTCATCACCACCAACCCCTACGACTTCCCCATGATCAGCCAGGGGCAGATAAAAGTGGCCTCTATCGATGACAAAGAGGAGCTGGATGCCACAGATGCCGCCATTGACATCCTGGGCTTCACCAATGATGAGAAGATAGGCATCTACAAGCTGACCGGCGCTGTCATGCACCACGGCAACTTACGTTTCAAGCAGAAGCAGCGGGAGGAGCAGGCCGAGCCAGACGGCACAGAGGTAGCTGATAAAATCGGTTACCTCTTGGGTCTGAACTCAGCTGACATGCTGAAACTTCTGTGCTACCCCAGAGTGAAGGTTGGCAATGAGTTTGTGACCAAGGGACAGACCGTGCCTCAGGTGTATAACTCTGTGAGCGCTCTGGCCAAGTCCATCTATGAGCGGATGTTCTTGTGGATGGTCATCCGTATCAATCAGATGTTGGACACCAAGCAACAAAGGAACTTCTACATCGGTGTGCTCGACATTGCTGGGTTTGAGATCTTTGATTTCAACACCATGGAGCAGCTGTGTATCAACTTCACCAATGAGAAACTGCAACAGTTCTTCAACCATCACATGTTTGTCCTGGAGCAAGAGGAGTACAAGAAGGAGGGAATCATCTGGGAGTTCATTGATTTCGGCATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCAATGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGGCTTCAGACACTTCCTTCAAGAACAAGCTGTATGACCAGCATATGGGCAAGAAAAACACTTTCCAGAAGCCCAAGCCTGCCAAGGGAAAGGCTGAGGCCCACTTCTCCTTGGTGCACTACGCTGGCATTGTGGACTACAACATCTGTGGCTGGCTGGACAAGAATAAGGACCCCCTGAATGACTCAGTGGTGCAGCTCTACCAGAAGTCTTCAGTCAAACTGCTGGTTCTTATCTACGTTGATTCTCCAGCTGAAGACAGAGCATCCAAGAAGGGAGGCAAGAAAAAGGGAGGCTCCATGCAGACAGTGTCTTCCCAGTTCAGGGAGAACTTGGGCAAGCTGATGACCAACTTGAGGAGCACTCACCCTCACTTTGTGCGCTGTCTGATCCCCAATGATTCAAAGACTCCAGgTCTGATGGAGAACTTCCTGGTTATCCACCAGCTAAGGTGTAACGGTGTACTGGAGGGTATCAGGATCTGTAGAAAGGGGTTCCCCAGCAGAATCTCCTACAGTGACTTCAAGCAGAGGTACAAAGTACTGAATCCCAGTGTTATCCCAGAAGGAACATTTATGGACAACAAGAAGGCTTCTGAGAATCTGCTTGGGTCAATCAATGTGGCGCACGAGCAgtacaagtttggacacaccaagGTGTTCTTCAAAGCTGGTCTGCTGGGTGTCCTGGAGGAGATGCGAGACGAGAGACTGGCCTCTCTGGTCTGCATGATACAGTCTTTGTGTCGTGGGTTCGCCATGAGGAAGGAGTTTGTGAAGATGATGGAGCGGAGAGAGGCTGTCTTCACCATCAAATACAACATTCGCTCATTCATGAATGTTAAACACTGGCCATGGATGAAGGTGTATTACAAGATCAAGCCACTGCTGAAGAGTGCTGAGACTGAGAAGGAGCTAGCCAACATGAAGGAGGACATTGAGAAGTGCAAAATCGCCCTGACCAAGGCTGAGGCCCGCAAGACAGAGCTTGAGGAGAAGATGGTGACCGTTCTGCAGGAGAGGAATGACCTGACGCTCCAAGTTGCATCTGAATCAGAGAATCTGACTGATGCTGAGGAGAGGTGCGAGGGGCTGATCAAGAGCAAGATCCAGCTGGAGGCCAAACTCAAAGAGACGACCGAAAGgctagaggatgaggaggagatgaaTGCTGAGCTGACCTCCAAGAAGAGGAAGCTGGAGGATGAGTGTTTGGAGTTGAAGAAGGACATTGATGACCTGGAGCTCACCCTGGCCAAAGTGGAGAAGGAGAAACACGCCACTGAAAACAAGGTCAAAAATCTGACTGAGGAGATGGCCTCTCAAGATGAGAGCGTTGCCAAGCTGACCAAGGAGAAAAAAGCCCTCCAAGAGGCCCAACAACAGACACTGGACgacctgcaggcagaggaggacaAAGTCAACACTCTGACCAAGGCCAAGGCCAAGCTGGAACAGCAAGTTGATGACCTTGAGGCTTCTCTGGAGCAAGAGAAGAGGCTCCGTATGGACTTTGAGAGAGCCAAGAGAAAGCTGGAGGGAGACCTGAAACTAGCCCAGGAATCCATAATGGACCTGGAGAATGACAAGCAGCAGTCTGAAGAAAAGATCAAAAAGAAGGACTTTGAGACCAGCCAGCTCCTCAGCATGATTGAGGATGAGCAGTCTCTGGGTGGTCAGCTGCAGAAGAAAATCAAGGAACTCCAGGCTCGTattgaggagatggaggaggatatTGAGGCTGAGCATTCTGCCAGGGCAAAGGTTGAGAAGCAGAGGGCCGATCTCTCCAGGGAACTTGAGGAGATCAGTGATAGGCTGGAGGAAGCTGGTGGAGCCACTGCTGCTCAGATCGAGATGAACAAGAAGCGCGAGGCTGAGTTCCAGAAACTGAGACGCGACCTCGAGGAGTCGACCCTGCAGCACGAGGCCACAGCCGCAGTCCTGAGGAAGAAGCAGGCTGACAGTGTGGCGGAGCTCGGAGAGCAGATCGACAACCTGCAGCGCGTTAAGCAGAaactggagaaggagaagagcgaGTACAAGATGGAGATCGATGACCTCTCCAGCAACATGGAGGCTGTCACCAAGACTAAGGGCAATCTGGAGAAGATGTGCCGTACTATTGAGGATCAGCTGAGTGAGCTCAAGACTGGGAACGATGAGAACCTTCGCCAAATCAACGACATCAGTGGACAGAGGGCCAGACTCCTGACTGAGAACGGTGAGTTTGGACGCCAGCTGGAAGAGAAGGGAGCTCTGGTGTTTCAGCTGACCAGAGTCAAGCAGGCCTTCACACAGCAGGTGGAGGAGCTAAAGAGGCAGATTGAGGAGGAGGTCAAAGCTAAGAATTCCCTGGCCCATGGTGTCCAGTCTGCCCGCCATGACTGTGACCTTCTGAGGGAGCAGTTTGAGTTGGAGCAAGAGGCCAAGgcagaactgcaacgctgcatgTCTAAGGCCAACAGCGAGGTGGCTCAGTGGAGGACCAAGTATGAGACGGATGCCATCCAGCGCACAGAGGAGCTTGAGGAGGCCAAGAAGAAGCTGGCGCAGCGTCTGCAGGACGCTGAGGAAATGATTGAGGCAACCAACTCAAAGTGTGCTTCGCTGGAGAAGACCAAGCAAAGGCtgttgggagaggtggaggacatCATGATTGATGTAGAGAGGGCCAACGCTATGGCTGGCAACCTTGATAAGAAGCAGAGAAACTTCGACAAGGTTCTGGCTGAGTGGAAGCAGAAGTATGAGGTGGGCCAGGCGGAACTGGAAGGAGCTCAGAAGGAGGCTCGTTCTATGAGCACAGAGCTCTTCAAGATGAAGAACTCCTATGAGGAGGCTCTGGATCAGCTGGAGActctgaagagagagaacaagaacctCCAACAGGAGATCTCTGACCTGACTGAACAGATCGGAGAGACAAGCAAGAACATCCATGAGCTGGAAAAGGCCAAGAAGACTGTAGAGATGGAGAACTCTGAGATCCAGACTGCTCTGGAGGAGGCTGAAGGAACACTGGAGCACGAGGAATCCAAGATTCTGCGTGTGCAGCTGGAGCTGAACCAGATCAAGGGTGAGGTGGACAGGAAGCTGGCAGAGAAGGACGAGGAGATGGAGCAGATCAAGAGGAACAGCCAGCGGATTATAGAATCCATGCAGAACACACTGGACTCTGAGGTCCGCAGCAGGAGCGACGCCCTGAGGGTGAAgaagaagatggatggagacCTGAATGAGATGGAGATGCAGCTGAGTCACGCCAATAGACAGGCCACTGAGGCCACGAAACAGCTGAGAAATGTCCAGGGACAACTTAAGGATGCCCAAATTCTCCTTGATGACGCTGTCCGTGAGTCAGAAGACATGAAGGAGCAGGCCGCCATGGTGGAACGCAGGAACGGTCTGATGATGACAGAGATTGAGGAGCTGAGGACTGctctggagcagactgagagagGCCGCAAAGTGGCTGAGCAAGAGCTGGTGGACGCCAGTGAGCGTGTGGGACTGCTCCACTCTCAGAACACCAACCTTCTGAACACTAAGAAGAAGCTGGAGGCTGACCTGGTGCAGGTGCAAGGTGAGGTGGACGACATCATCCACGAGGCCAGAAACGCAGAAGAGAAGGCCAAGAAGGCCATCACTGATGCGGCCATGATGGCtgaggagctgaagaaggagcaggACACCAGTTCTCACCtggagaggatgaagaagaacctGGAGGTCACAGTCAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGAATCTGGCCATGAAGGGAGGCAAGAAGCAGCTCCAGAAACTGGAGTCCAGGGTACGTGAGCTGGAGGCTGAGGTGGAGTCCGAGCAGAGAAGAGGTGTAGACGCAGTTAAGGGAGTCCGGAAGTACGAGCGCAGAGTCAAGGAGCTCACATACCAAACTGAGGAGGACAATAAGAATATTATCAGACTTCAGGATCTAGTAGAAAAGCTGCAGCTTAAAGTGAAGGCCTACAAGAGGCAGGCTGAGGAAGCGGAGGAACAAGCCAACCAGCACATGTCTAAGTTCCGTAAGGTTCAGCATGAGCTGGAGGAGGCTGAGGAACGCGCTGACATTGCAGAGACCCAGGTCAACAAGCTCAGAGTCAAGAGCCGTGACTCTGGAAAGGCCAAAGAAGAGTAAacctattttattttaaatagagAACTTGGACTGAACAATTCTTAAGACAGCCTTACATTATTCTAGCTACTACAAGGCAAAGAAACCAGGCCAGGGGCTGGGTGGTCAGTGGGGGTACtggttttttgttattttttctcCTTGTCATttgttttttgtgttttgttgtcCATTTTATTTTGATgcatgttgttgtggttgtcttGTGTGTAAAAGGGGTAGCCCACAAATTGTTTTGGGAACTTGTTTACACTGTTGTATGCTCCTtaataaaacatatttgaaaTGTAAAAACATATGTACAGTA

Function

GO: NA

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU423607 lncRNA upstream 80338 16868670 ~ 16869064 (+) True G372621
TU423598 lncRNA upstream 82898 16866270 ~ 16866504 (+) True G372617
TU423593 lncRNA upstream 93919 16855129 ~ 16855483 (+) True G372612
TU423591 lncRNA upstream 94952 16854229 ~ 16854450 (+) True G372610
TU423587 lncRNA upstream 108368 16840489 ~ 16841034 (+) True G372606
TU423683 lncRNA downstream 19390 16987199 ~ 16987399 (+) True G372676
TU423687 lncRNA downstream 23003 16990812 ~ 16991929 (+) True G372680
TU423696 lncRNA downstream 29207 16997016 ~ 16998461 (+) True G372683
TU423698 lncRNA downstream 36575 17004384 ~ 17005069 (+) True G372684
TU423699 lncRNA downstream 48591 17016400 ~ 17016603 (+) True G372685
XM_021601952.2 mRNA upstream 205335 16741353 ~ 16744067 (+) True purbb
XM_036976947.1 mRNA upstream 214273 16732636 ~ 16735129 (+) True ved
XM_036976935.1 mRNA upstream 223393 16712182 ~ 16726009 (+) False polm
XM_036976936.1 mRNA upstream 223393 16712184 ~ 16726009 (+) True polm
XR_005051667.1 mRNA upstream 255972 16690905 ~ 16693430 (+) False LOC110523336
XM_021601962.2 mRNA downstream 27585 16995394 ~ 17012011 (+) False st8sia5
XM_021601963.2 mRNA downstream 27587 16995396 ~ 17012011 (+) True st8sia5
XM_036976540.1 mRNA downstream 51778 17019587 ~ 17071539 (+) False LOC110522812
XM_021601970.2 mRNA downstream 151978 17119787 ~ 17125777 (+) True atp5fa1
XM_021601254.2 mRNA downstream 158547 17126356 ~ 17147778 (+) False LOC100136246
TU423600 other upstream 67217 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 67217 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 210902 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 728469 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1154280 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 736304 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 1099634 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 3015452 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3623671 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3775775 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile