RNA id: XM_036976540.1


Basic Information

Item Value
RNA id XM_036976540.1
length 7906
RNA type mRNA
GC content 0.52
exon number 42
gene id LOC110522812
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17019587 ~ 17071539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCCTCAAAAGAGAAAAAAACTGCAGGAACGGAGGAAACTGAAGAGGTGGTTTGCGACGTGGAGGAAAAGGAGCCAAAACCGAAAGGGAAGAGCAAGTCTGACGCCAGCGGAGACACCAAGCCAGACGGAGCGAAGAAGAGGAAGAAACACAAGAGCCCAGAGGAGTCTGACGAGgatccagagaaagagaggaagaagaaaggGGAACGCCACGATAAGGtgaaagagaaaaaagaaaagaagaaaaagaaagcaGAAGATGAtgcagagaagagggagggggatgaAGTGATTGAAAatgaggaagagggagatgacGAGCAGAACAACAATGACACCATCGAAACCAAACCCAAGAAGAAGAAATCCGAAGAAGAGGACATGACTGAGGGAGAACTTAAGgaggaaaagaagaagaaaaagaagtcGTCTTCTGAGGgagaccaacagggagaggaggagatggggtcCAAAGGCAGGAAGTCCACAGATggagggaagaagaagaagaaagctCAGGATGAGGATGATGAGGACAAGAAAGACAAGAAAGGGAAGAAAGGGAAGAAGCCCAAGGCCAAGCAGGTGGATTACGCTGAGATCTACTACAATGAGCTGATGACCTACCAAACGGACTCCTCCGATGGCTATGAGGAAGAGTACCACAAAAAGAAAGtgtatgAGGTGGTGACTGTCACAGGTGATGTGAGAGGGGCAGGCACAGACGCCAATGTGTTTGTCACTCTTTTTGGAGACTTTGGCATCACTCCCAAAGTGCACCTGGCCAGCAAAAGCCGAACGGCATTTGAGAAAAATAAGACGGACGTGTTCCGgattaaaacacacaatgttGGGCCCTTGAAGAAGCTGAGGATTGAACATGACAACACAGGTGGCTTGAACGCCAGCTGGTTCCTGGACCGGGTCGTGGTGACCGACATGAACCGTCCACACCTGCGGTTCTACTTCGCCTGCAACAACTGGCTGAGCCGTGAGGAGGGGGATGGCCTGTATGTCAGAGACCTGCTGGGCAGCCTCAACCCCATGGATGTCCCCAAACTGAATAAGTACATAGTGAGTGTGTTCACTTCTGCTGAGAAGGGCAGCGGGACTGATGCTGACGTCTTCCTGAATATCTTTGGAGAGCATGGCGATACAGGGGAGAGACGGCTGGACAGTGACAAAGATAATTTTGAGCGAGGCACGGAGGACAAGTTTACTATTGAATCACCAAACCTGGGAAGGCTAAAGAAAATCACCATTGGCCATAACAACAGGGGCTCATCAGCTGGATGGTGTCTGgataagGTGGTCATTGATGACATGGGGAACAAGGAGGTGTATGAGTTTCCAGTGAATCGCTGGTTCGCCATGGATGAAGAAGAtggaaagatacagagagatgtgttggtgggagcaACACAGCCCATGGCGGTGGTGTACAACGTCCAGGTGATGACGGGCAACGTGAGAGGTGGTGGCACCAACTCTAAGATCCACATCATCATGCATGGCACCAAGGGCCTGAAGAACAGTGGCAAGGTGTTCCTGGAGGGTGGAGCATTCGAGCGGGGGCTCATCGATATCTTCAACGTGGAGATTGCTGCCCTGCTCAGCCCACTCAGTAGGGTCACCATCGGACATGACAACGGAGCTGTTGGGGCCGGCTGGTACTGCGAAAAGGTGACAGTGTACTGCCCATTCACAGGGATTGAGCAGACGTTTCCCTGTTGCAAGTGGCTGGATGAGGACGAGGGGGACGGACTGATTGAGAGGGAGCTTTACGAGATGGTGTCCCTCAGGCAGAAGAAACTTAAGAAGTACCCGTGGTCACTGTGGATCTGGACATCGGACGTGAAGGGGGCAGGGACGGACGCCCAGGTCTTCCTACAGATCTACGGTGAGAAGGGCAAGTCAGATGAGATGAGACTGGAGAGCAACTCAGACAGCTTTGAGCAGGCTCAGCTGGATAAGTTCATGATTGAAATGCCAGACATCGGAAAGCTGACGAAAGCCCGTATCTGGCACGAAAAGAGACATCCTTTCGCAGGCTGGCATTTCGCTAGGGCCACGGTGATGAAGACTCTGACAAGGGAGAAGTACTCGTTTAACTGTGGCCGCTGGCTGGACATCAATGAGGATGATAATGAGATCATCAGAGAGCTGCCCGCCACCGGAGCTCTCATCCCGGAGCCGTTACTACTGCTGAAGTATCGCATCACCATCTGTACTGGGAGAGTGAGTGGAGGTGGCACTGATGCCAGCGTATTCCTTAATGTGATCGGGGACCTGGGAGACACAGGGGATCGACTCATGTTCCTCAGCAAAAACAACGTCAACAAGTTTGAAAAGGGCAACGCCGATGAGTTTCTGACCGAGGCGGTGTCGTTGGGGCAGGTGCGCAGGGTGCGTATCGGCCATGATGGGAGGGGTGGAGGCTGTGGTTGGTTCCTGGATAAGGTGTTGGTCAGGGAGGAGGGCCAACCAGAGTCTGCGGCCATAGAGTTCCCCTGTAACAGGTGGTTGGACCGGAATGAGGACGATGGACAGATCGTTCGTGAGTTAGTGCCAGCAGGAGATGGTCTGCGTCTCCACAATGTCAACTACCATATCTCGGTGAAGACAGGCAACATCAACGGGGCCAGCTCGGACTCCAAGGTGTTTGTTAAGTTGTACGGAGAGAAGGGCGACACCACGAGGATACTCCTGGTGGTCTCGGACAACGACCTGAGTAACTACTATGAGACGGGCCAAACTGATATCTTCACCGTCGAGACCTATGACATCGGACAAATCCACCGTCTTCTGATAGGCCACACTAACGAGGGTCTGCGGGCTGGTTGGTTCCTGGACAGTGTCCAGATCATTGTTCCGGTCCATGGGAAGCAGTACCAGTTCCCCAGCCATCGCTGGCTGTGTAAGGATGAGGCTGACGgcaaggtggaggtggagatctATCCCAGCGAGACCCTGGACATCGAGAAACTGATTAACTACGAGGTCACAGTGGTCACGGGGAACATGCGCAATGGTGGCACCAACGCCAATGTGTTCTGCCAGATCTACGGAGAGGAGGGCAAGACCGAGCTCATCAGCCTCAAGAGCCGCTCCAACAACTTTGAGCGCGGGACCACAGAGATCTATAAGATCGAGGCGCTGAACGTGGGCAAATTATTCAAAATCCGCATCGGGCACGATGGTTCGGGCGTGGGCGACGGGTGGTTCCTTGAGACGGTGGACATCAAGCGGCTCACTATGGCCATGGTACAGAGGGAAGTGGTGAAGGAGAAACCAAAGGATGACAAGAAGGACAAGAAGAagaataaaaaaaagaagaaagaagaggatgaggaggaggagtacGTGACGGAGCTCCAGGAGGTGACAGAGAGCGTGACGTTCCCCTGTCATCGATGGCTGGCCCGCGACGAGGAGGACGGGGAGATCGTGGTGGAGCTCCTACCCGAGGACCCCGGAGACCTGGAGGAGAACTCCTATGAGGTCCATGTGTTTACTGGCCCCATGTGGGGAGCCGGAACCGATGCCAACGTGTACATCAACATCTACGGAGAGATCGGTGACACGGGCGAGCGGAAACTAAGAAAGTCCAACAACCTCAACAAATTTGAGAAGGGGCAGGAGGACGTGTTCTCCATGCAGGCCATCGATCTGGGCATTCTGAAGAAGCTGAGGATTCGTCACGACAACAGCCAGCCTCATGCTGCCTGGTTCCTGGACAGGGTGGAGATAGTAGACAACAAAGACGACACCacGTACTACTTCCCATGTAAACGGTGGCTGGCCATCGATGAAGATGATGGACAGATTGCCAGGGAGCTGGTCCCTGTGGACGAAGCCTTTATGAAGAAgggtgaggatgatgatgatgatgatgacgaggaAAACTCCAGTGCAACACTCGGCCTGGAACAGAAggCCATGTCCACCACCTTCACAATGAGGGTAAAGACTGGAGACAAGAAGTATGCGGGCACTGATGCCAACGTGTTCGCCATCCTGTACGGCATGAAGGATGATACAGGCATCATAATGCTGAAAGCATCCAAGTTACATAAGAATAAGTTTGAGCAGGCCATGATCGATGAGTTTACAGTGGAAGCTGTGGACATTGGAACACTGAAGAAAATACGCATAGGGCATGACAACTCAGGGGCAGCATCAGGCTGGTTCCTGGACTGGGTAGAGGTGGATGCCCCCTCCCTGGGCCAGAAGCTGAGGTTCCCCTGTGGTCGCTGGCTGGATAAGGGAGAGGACGACGGGGCCATCGTCAGGGACCTCTTCCCTGCAGACCTCCAGACTGAGCTCTACACACCATTTGTGCCCTATGAGATCAAGACGTTCACCAGTGACCTGTTTGCAGCGGGTACAGACGCAGATGTGTTCATCGTGCTCTACGGCCGAGACGGGGTGTGCACCCAGCAGAGGTCTCTCTGTGTCAACAAGAGGGAGAGGACCATGTACTTTGAGAGGGGAGCTGAGGACATGTTCATCGTTGAGTTGGAGGACGTGGGTGATGTCATAGAGAAGATCCGTATTGGTCATGACAACAGAGGGCTAAACGGAGGCTGGCACCTGGACAGAGTGGAGATCAGACGACTGCTGAGGAAGGGGAAGGGGTCGGAGACTATTATCTTCCCATGTGAGCGCTGGCTGGCCAAGTCAGAGGATGAtggagaaacagtgagagagttAGTACCTTCTGACATCATAACGGAGAAACTACTACGAGATGGTACCCTGAAAGTCAGCGAGGTTGAGGTGGAAGATGCACTGGAGACTCACACTTACAAAGTGTCTGTGATGACGGGCGATGTTTACGACGCAGGCACCGATGCCAACGTCTTCCTGACCATCTACGGAGACCTGGGAGACACTGGCGAGCGCAAACTCAGCAAGTCTGAGACCAACGGCAACAAGTTTGAGAGAGGAGCGGTGGATAAGTTCACCATTGAGGCGGTGGACCTGGGTCAGGTGTTTAGAATGAAGATTCGCCATGACAACAGCATGATGAGTGCTGATTGGTACCTGGACCAGGTGGAGGTGGTTGACGAGGATACGGAGGAGGTCTTCCTGTTCCTGTGTGAGCGCTGGCTgtccagaaagagagaggacagacgcATCGAAAGGATGTTCTATGTCAAGGGTtacgagggggagagggagactatCCAGGGCAGTAAGAAGAGCTCAGCCCTGATCATGAAGAGTGTGGACAGCAACatgaacaagaagaagaagaagggggaggACGTCCAAAAGGAGAGCACcaTCATCCCATACCACTTCACCATTTCCACGGGGGAAGAAAACGATGCCAGTACCTGCAGCAGGGTCTATGTGATCATCATGGGGCCAAACCACACCCAGACACAGAGGCTGTGGCTGGACCTGCCTGGGGGGAAGAAGTGCTTTGAGTCTGGGTCTCTGGAGTCCTTCGAGGCTCATGGAGCTGATGTTGGTGAGATTAAAAAAGTGGAGCTCGGACATGACGGCGCCACTCCGGAGAGCTGCTGGTTGGTTGATGAGCTAGCTGTTGCCGTGCCAaccaaaggggttaaatacattttCCAGTGTAAGTGCTGGTTGGCCAAAGATCGGGGCGATGGACTGACTGCCAGGGTGTTCAACGTGTTGGATGCAGATAGCATCACCATCTCCCAAAAGATCATCTATGAGGTGACGGTGGTGACGGGAGATGTTCAGAACGCTGGGACAGACACCCAGATCTACGTGTCTGTGTTTGGGACCAACGGCACCACAGAGGAAATCCTACTGCAGAAGAACGAGGACAGGTTTGAGCGGGGTCAGGAGGACACGTTCAGCCTGGAGGTCGATGATATTGCTCCCCTGAGGAAGATGAGGGTCCGTGTTGACGGCTCTGGTAGCCGACCTGACTGGTTCCTGGCTAAGATCATCATGCGTAACCTGACCACAGAGGAGGTGTCAGTGTTCACCTATGAGGAGTGGCTGTCTAAGACCAAAGGACCCAAGAGGACCATGATCTGTGAGATGGCTGCTGTGGTGGAtgaggaggagatggtggagaTCACCACCTACATTATCCAGGTCAAGACCAGCGACATTGGagGGGCAGGCACTGACGCTAACGTGTGGATCATTGTGTTTGGAGAGTGCGGTGACACTGGGACCCTGGCGCTGAAAGAGTGCCAGAAATCCAACAAGTTTGAGCGCAAGCAGACAGATGTGTTCCGTTTCCCTGACGTGCTCAGCCTCGGGGAGCTCTCTAAGGTGCGGGTGTGGCACGACAACTCAGGGCCTGCTCCAGGATGGCACATAGAATACATTGATGTGAAGGATGAGGCCTTGGACAGGACATTTCGCTTCCCCTGCGACCGCTGGTTGGCTCAGAACGAGGACGATGGTCAGATCATGAGGGAGTTGTCCTGCGCCAACAACGACATTTTAGACCTCAACGAGAAGACCAAATATGAAATTATTACCACCACGGCGGACGCAGACGACGCAGAGACCAAAGAGAACGTCTGGATCGCACTGGAGGGGAAGAAGGGGCGTTCGAAAGAATTTATGATGGAGAACTCATCAAAGAAAAAGAGGTTCTTGCGGGGAAACAAGGACAAGTTTGAGTTCTCCTCCAAACAGCTAGGGGACATCGCTGGCATCTGCCTGGGCCACACCCCCAAGGATGGGAAGAAGGTGAAAGGTGAGGCGTTCTGGCACGTGAAGGAGGTCGTTGTCATAGAGAAAGTGCTGGGCAACAGGTTCATATTCATCTGCAATGCCCTGATCCCCCTCTCCCCGAAGAGGGACGAGTTTGTGACCATCGAGTGCACCAAGGCCATCGAGAGCTTCGCCAGCAAAGCCCGCAGCCTGGTGCCTGTCAAGTACGAGATCATCCTCATCACGGGCGACGAGAAGGGGGCAGGCACCGATGCCAATGTCTTCATCACCATCTACGGTTCCAACGGCGACTCGGGCCGCCGGTCGCTACGTCAGAAGTTCCGCAACCTGTTTGAGCGAGGCCAAACGGACCGCTTCCTGCTAGAGATGTTGGACATGGGTGAGCTgctgagagtgtgtgtggagcATGACAATACCCGCCTCAGCCCCGGCTGGCTGCTGGACCGCGTGGAGGTCACCAACACAGCCAACGGTGTCACCACCATCTTCCTGTGTGGAAAGTGGCTGAACACCAAGAAGGCGGACGGACAGATCTTCAGGGTCCTCTACCCAAAGTACTAAAGACCTCATATTGAGACTTCTCCACTATATGAAAACGTATGTCCTTTGCACAGCAGATGATAGAGGCCTCGCCGTGTGTTGGACTCTACCCAAGCAACTCCGTAATGAAGATATACAAACTCTTTGAATGGAGTTTGGATGTGGGCAACGGTttcattttaaaaatgttattgCCTCTATATGGTCATGATCTCAGGAAAGgaaaatgtttatatatttattactacATTTCTAGAATATCTTATAGTTTGGCTTTATTGCATTACTACTGAAGGCAAGTGGCCTGGCGTTTATGGCTAAAACACAATAGGGTCATAAGGCCAGGTAACATGATTGTGCCACCATTTTAAAAGTACCCATTATCAGGAATGGCATGTTGCTCAGCTGCTTGGTTGTAAATTAGGTTTTATAAGAGAGTATACTATTTTGTACTGCTTATTCCAAAACACTTTTTGTTTTTCAAAACTGCTTTTTAAGATTGTGGTTTGACTGATGTGTTCATCTCCCGGTGAGATTTCGATTACCTTGTGAAGACAGACTCAGAAAACAAATCAAAAGAGGATTGTCAACCTCATCAGGATGGAGATCATGTCTCATTCTCAATGAAAGCATTTTTTTTCATCCTTCTCCTCTAACTTCAAAGAGTCATAACTGGCCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU423699 lncRNA upstream 2984 17016400 ~ 17016603 (+) True G372685
TU423698 lncRNA upstream 14518 17004384 ~ 17005069 (+) True G372684
TU423696 lncRNA upstream 21126 16997016 ~ 16998461 (+) True G372683
TU423687 lncRNA upstream 27658 16990812 ~ 16991929 (+) True G372680
TU423683 lncRNA upstream 32188 16987199 ~ 16987399 (+) True G372676
TU424154 lncRNA downstream 93 17071632 ~ 17110493 (+) True G373075
TU424199 lncRNA downstream 40919 17112458 ~ 17112673 (+) True G373109
TU424215 lncRNA downstream 77517 17149056 ~ 17149268 (+) True G373125
TU424218 lncRNA downstream 80406 17151945 ~ 17152244 (+) True G373128
TU424222 lncRNA downstream 86771 17158310 ~ 17158643 (+) True G373132
XM_021601962.2 mRNA upstream 7576 16995394 ~ 17012011 (+) False st8sia5
XM_021601963.2 mRNA upstream 7576 16995396 ~ 17012011 (+) True st8sia5
XM_021601959.2 mRNA upstream 51778 16949402 ~ 16967809 (+) True LOC110523342
XM_021601952.2 mRNA upstream 275520 16741353 ~ 16744067 (+) True purbb
XM_036976947.1 mRNA upstream 284458 16732636 ~ 16735129 (+) True ved
XM_021601970.2 mRNA downstream 48248 17119787 ~ 17125777 (+) True atp5fa1
XM_021601254.2 mRNA downstream 54817 17126356 ~ 17147778 (+) False LOC100136246
NM_001124510.1 mRNA downstream 60171 17131710 ~ 17147778 (+) True LOC100136246
XM_021601976.2 mRNA downstream 119877 17191416 ~ 17217186 (+) False LOC110523352
XM_021601977.2 mRNA downstream 119877 17191416 ~ 17217186 (+) False LOC110523352
TU423600 other upstream 137402 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 137402 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 281087 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 798654 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1224465 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 632574 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 995904 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2911722 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3519941 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3672045 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile