RNA id: XM_021601970.2


Basic Information

Item Value
RNA id XM_021601970.2
length 1892
RNA type mRNA
GC content 0.53
exon number 11
gene id atp5fa1
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17119787 ~ 17125777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCCGGTTCACAGTATAATTTTTTACCCTGTCCTCCATCTTCTTTACGTGATTTAACCAGTAGGTGTAGTTGGACAAATCCGCGTAGAAACATTAATAGCTATGCTGTCAGTTCGCGTTGCCGCGGCCCTTGTCCGCACCCGGGCTGGATTTGTTTCCAAAAATGTTTATGCTGCTGCATGTGTAGGAGCCAGGCACCTGCACACCACAAAGCCATGGATGGCCAAGACGGGAACAGCAGAGGTCTCGTCCATTCTGGAGGAGAAGATCCTGGGGGCTGACACTAGCGCTGACCTGGAGGAGACTGGTCGCGTGCTGTCCATCGGTGATGGTATTGCCAGAGTGTATGGTCTCAGGAACGTGCAGGCTGAGGAGATGGTGGAGTTCTCCTCCGGGCTTAAGGGCATGTCTCTGAACTTGGAGCCTGACAATGTCGGTGTTGTGGTGTTCGGTAATGACAAGCTCATCAAGGAGGGCGATATTGTCAAGAGAACCGGAGCCATCGTGGACGTGCCAGTCGGTGAACAGCTGCTGGGTCGTGTGGTGGACGCTCTGGGAAATGCCATCGACGGCAAGGGTCCCCTTGGGTCCAGCATCCGTAGGCGTGTGGGTCTTAAGGCCCCTGGCATTATCCCCCGTATTTCTGTGAGAGAGCCCATGCAGACTGGCATCAAGGCCGTGGACAGCCTGGTGCCCATTGGCCGAGGTCAGCGTGAGCTGATCATCGGTGACAGGCAGACTGGCAAAACCGCCATTGCCATCGACACCATTATCAACCAGAAGCGCTTCAACGATGGCACTGATGAGAAGAAGAAGCTGTACTGCATCTACGTCGCCATTGGTCAGAAGAGATCCACCGTGGCCCAGCTAGTGAAGAGGCTGACTGACGCCGACGCCATGAGGTACACCATTGTGGTGTCCGCCACAGCCTCCGATGCCGCTCCCCTGCAGTACCTGGCCCCttactctggctgctccatgggAGAGTTCTTCAGAGACAATGGCAAGCACGCGCTCATCATCTACGACGATTTGTCCAAGCAGGCTGTGGCTTACCGTCAGATGTCCCTGCTGCTACGTCGTCCCCCCGGTCGTGAGGCCTACCCCGGGGATGTGTTCTATCTCCATTCTCGTTTGCTAGAGAGAGCAGCCAAGATGAACGAAAACTTCGGAGGCGGCTCCCTCACCGCCCTGCCCGTCATTGAGACCCAGGCCGGTGATGTTTCCGCCTACATTCCAACCAATGTCATCTCCATCACAGACGGACAGATATTCTTGGAGACTGAGTTGTTCTACAAAGGTATTCGACCAGCCATCAACGTAGGTCTGTCTGTGTCACGTGTCGGCTCTGCCGCCCAGACCAAAGCCATGAAGCAGGTGGCTGGTACCATGAAGCTGGAGCTGGCCCAGTACCGTGAGGTGGCTGCCTTCGCACAGTTTGGTTCTGACTTGGACGCTGCCACCCAGCAGCTTCTGAACCGTGGTGTTCGCCTTACTGAGCTCCTCAAGCAGGGGCAGTACTGCCCCATGGCCATTGAGGAGCAGGTTACAGTCATCTATGCTGGTGTGAGGGGACACTTGGACAAAATGGACCCAACCAAGATCACAAAGTTTGAGAAGGCTTTTCTTCAACATGTTCTCAGCCAGCACCAGGATCTCCTAGCACAAATTAGAGCTGATGGCAAAATCTCAGAAACCGCAGATGCCCAGCTTAAGCAGATCGTCTTGACCTTCCTGGCAAGCTTTGAGTAGTCTTATTTTTGGTCAACTATTTTGTCAATGTTTGCATAGTGCGGATGTTAAACTTTAAAAACAAATCTGAAAATAAAGTGCCATTTGATATTACTGTACAGATGTCTCCTAACAGAGAATAAAGTCTTTCTACTCCAGGA

Function

GO: NA

KEGG:

id description
K02132 ATPeF1A, ATP5A1, ATP1; F-type H+-transporting ATPase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424199 lncRNA upstream 7114 17112458 ~ 17112673 (+) True G373109
TU424154 lncRNA upstream 9294 17071632 ~ 17110493 (+) True G373075
TU424169 lncRNA upstream 50362 17069181 ~ 17069425 (+) True G373090
TU424152 lncRNA upstream 73786 17045538 ~ 17046001 (+) True LOC110522812
TU424150 lncRNA upstream 74550 17045014 ~ 17045237 (+) True G373073
TU424215 lncRNA downstream 23279 17149056 ~ 17149268 (+) True G373125
TU424218 lncRNA downstream 26168 17151945 ~ 17152244 (+) True G373128
TU424222 lncRNA downstream 32533 17158310 ~ 17158643 (+) True G373132
TU424223 lncRNA downstream 32929 17158706 ~ 17158963 (+) True G373133
TU424225 lncRNA downstream 35490 17161267 ~ 17161493 (+) True G373135
XM_036976540.1 mRNA upstream 48248 17019587 ~ 17071539 (+) False LOC110522812
XM_021601962.2 mRNA upstream 107776 16995394 ~ 17012011 (+) False st8sia5
XM_021601963.2 mRNA upstream 107776 16995396 ~ 17012011 (+) True st8sia5
XM_021601959.2 mRNA upstream 151978 16949402 ~ 16967809 (+) True LOC110523342
XM_021601952.2 mRNA upstream 375720 16741353 ~ 16744067 (+) True purbb
XM_021601254.2 mRNA downstream 579 17126356 ~ 17147778 (+) False LOC100136246
NM_001124510.1 mRNA downstream 5933 17131710 ~ 17147778 (+) True LOC100136246
XM_021601976.2 mRNA downstream 65639 17191416 ~ 17217186 (+) False LOC110523352
XM_021601977.2 mRNA downstream 65639 17191416 ~ 17217186 (+) False LOC110523352
XM_036976965.1 mRNA downstream 65639 17191416 ~ 17217186 (+) True LOC110523352
TU423600 other upstream 237602 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 237602 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 381287 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 898854 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1324665 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 578336 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 941666 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2857484 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3465703 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3617807 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile