RNA id: XM_036976965.1


Basic Information

Item Value
RNA id XM_036976965.1
length 4988
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC110523352
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17191416 ~ 17217186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTCTCGGTGGTGCTTTGTTGACAAATTTCTGCGCATGGGCAGTGAAAGGGCCGGTGGATAGTGAAACATTGGATCGGACAGAATAAATGAGTGGCGCACCAAACTGAAGGCCAAAGGAAGTGAAATTGGATGAAAAGTAAATTATGTAGCGTGAATGTTCACGAGAAGTTGTAAAACGAGTTGTATGCAcgatttttacattttattttttactttaaacACTTATTCAACAATGGAATGCTAAACGTTTGCACAACTCTCTGATCCAGATGCACATTAGGCCTTGAGCTGGACTTCACACATGGATGGACTCAGAACCATTTCTTTGCCATAAGGATCAACTGTACCAATGGATCAAGACACACACATTTACAGAAATGGCCAAGGTAACAGGGGAAGGTCAGTCAGTGCTACTGAGGAGACCACCCCCTACTATCTGGAGACGCCTTACGGCTACCAGCTGGACCTGGACTTCCTCAAGTACGTGGACGACATTCAGAACGGCTCCACCATTAATAGGCTGAGGAAGAAGCCCCTCAGGGCGACCAACAGCAGGGCAGAAGCGCAAAGTGGCACCACACCCAGCCAATCATGGACCTCATCGGAATCCCTGTCCTCGGCGAGTAGTGGTGACACGCGGGTGAGTCAGTCTGCCATGTCGACCGGTAACCGAGGAAGaccccctcttcctccaccccaCAGTGCCTCTACCACCAGCAACACCACCCCGTCTAGTCAGGAGGGGTCCTCCGTCCCTCTGAAACCCCAAGAGGGGAAGCCTGCTCTGGCCGTCCGCTCCCTGAACACCCCCAGGTTCAACCCTCTAGTGGAGAAGACCCTGGTGGAGACCCGTAGGCGCTTAGAGCAGGAGAAAacctccagcaccaccccagcccagccccaccctGAGCCACATCCCCGCCGGCGCCTAGCCAGCTTCGGGGGAGTGGGCTCCAGTGGCTCCCTGTCCGCCTTCACCGGCTGGGGTTCCTACAACCAGAACAACAGCGGAAATGTCAACAAGCCCCATGCTGAAGGTGAGCTTTCCCTGCCCCTATCCCTCCACCACGGCTCTTCCCTGGGCAGCGGAGGGTCCCTGAGACCCAGCCCCCAGAGCTCTGGCAGGGATACCCCAGTCACGGGCCTCAGCCCCCTGCACCTGCAGCATGTCAGGGACCAGATGGTGATGGCCATCCAGAGGCTGAAGGAGCTGGAGGAACAGGTGAGGAGCATCCCTGTTCTACAGGTGAAGATCTCTGTCctccaggaggagaagagacagctgGTCTCTCGGATGAAGAACCAGGACCAAGAAGAGCTGAGTGACGTGTTCCGGAAGAGAGCCCACAGCACGGGCAGCGCCGGTCGGTTCCGGGTTGGGAAGGGCTCTGAACTTCTAGGGAAACCTGAAGATGGGCTGGAGAACAAGGCAGAGCACAACAGTGACTCCTCTGGCCTGAAGGAGTTCCAGCAGCTGACTGCTGAGATGGAGGCTTTGGAGAGGACCATCAAGGGTGGTCGCTTGCAAGCACGGCATGGCCTCAACCAGAACACATTACGCAGGAACTGCAGAGCTCACAAATCAGTAGCCATCGGCATTGATGAAGACTTAGATGCCATCTTAGATGTCAGGTCCTCAAAACAACACAGGGACATCGCTTTGAAGACCAAGCCCACAGACACACGATGCATAGCAACGGGTGTAACTGAGGCCCACCTCGTTGTCACCGCGGATAAGGGGTCGGAGCTAGATGCCCAGCAGAGAATCATAGAAGCCCTGAAGGAGAGGGTGTGTCAGTTGGAGGCAGAGGTAAAGGAGTCCACCCTGCAGATGGAGATGGGCAGGCTGAAGCTGGAGCTACAGGCTGCCGGGGCCAGGAACAAGGCTGATAAAGGCTCCATCGCCAGGCCATCCACCCACAGCACCTCCACAGCCACGGAGGCCCCGGAGGCCAGGCCCAAGGCCCAGACCAGGAGCCTGGGGGTGGGCAACCACACAGAGGTCCAGGACGCCTCTGCTGGAGGTAGgctggaggtggaggggtggggcTGTAGTGTTGGAGTGTCCTGTAGGCCGGAGCTGAAGAGTGTGAGCTCAGGACCAGAGGTACCGATGACTTGGtgggtggtcagagagagagtggagacccAGGACCAATGTGTTGGGAGACAGGTGGTGATGGTCACCCAAGGTGTGGGGACAGGGGTGAGGGTGTGTGAGGCAGGTGTCAACACAGATCTGACCATGGAGAGTTTGGCTGCAGCGAgaagatgggggatgggggagtgtCAGTTGGTGTCGGTGGGGAGCGGGGACTGTACGGTCGACGACGTGATGAGTGCTGTAAAGGAGGTCGGCATGGCAACCGACCCTCCAGTCAGAGGGGTGGATTCAGGTGTCATGGTGTCACCTCAGACGTTCTCCCAGCGCACCAACACATCACCAACACTCAGCTCGGTCTCCCGTTTCACAAACACCTGCCGCTTGTTCAACACCACCTCCAGCACCAACACCGTGCTCAACACCCAGGAGAAACACACCAACACCGTGCACACCGTCACCCGGAACATCGCTGTTGGCAACAGCAGGGTCCTAGAGCTAATCCAGACCGTTGCTAAGACCCGCTCCGTTGGCATTGAAACGACCGTGCCATGGGGAGGAAACGCAGAACAACCAACCCAAACCAATGCGGCCGTCACCAAGGCAACGACCAGAGACGCTGGGGTCGGGATGACTAACGTGAACGACAACTTCCTGGTTGGACTGAAGACCCGGAACATCGCCTGTGGTCCTTCCTGTCTCCCCGACCCCACCAAGACCAGGAGTATTGGGATCGGGGTGGGTGAGGGGCGCATACGGGACCTTGCAGGACCACCATCACTGACACAGACATCCCATTCTCACCAGGCCCAGGGCCAATCCCAGTTACAGCCTGGTCTGGACCACTACATAGAGAAGATGCAGTGTCTGCTGAGGGAGCAGCAGGGCCTGCTGACTGAGAGCTATAGTGAGCTGGGAGAGGTGTTCATCCAGCCGGCGTCAGACAACACCACCCTCATCATGTCACCCGTCAACTCTGCCATGATACAGGGAGGCACAGAGGACAGGCCAATACCCTCACAATCCACAGATTGTGTACAGTTCCAGTCCATTGCAGGGCCCGGCCAGTTCACTAACACCTCACCTAAGAGAAACACAgaaaggtcaggggtcagccaGTGTGTCACTAAGGAGTCAGAGGTCAAGCAAAAGATACTACGCATAGAACACCAAACATCCTCTGCATTGCAcgGTCAGCCCACGACCGCCAACATGCTGAGGTCCATCATGAAGAAACAAGATGGTGACCGAGGCTACACTGGAACCAGGAAGAGCCTGAAGTTTGTGGGCGTGACCACAGGGTGTGAGTCCATGTCAACTAGTGAACCATCCAGCTctgaagaagaagagaagaacgGGAacgggaggtggagggaggtctGTGGCCTCCAGGATCGGAGCCGAACGGGCGGGAACAAAGGCGTGGCCAACAGAGAATGTAGTGGCCATGGGAGGACGGAGATACAGGAGAGTTTTCAGTTGAGTGAGAAGATGCTGTCTGCTTGCCATGCACTGAAGACCCATCTGAGTGACGACCAGATTTTATCCAGCAGAGAACTGCGGTCCTGCCTGAACATGCTGCAGCACGAGTGGTTCCGTGTGTCCAGTCAGAAGTCAGCTGCTCCGGCTGTGGTGGGGGACTATTTAACGGCGTTCCGGTCAGTTTCTCCAGCCGTGCAGAGACACGTAGCCAACTTGGCAGACGGTAACGGTAACACAGCACTCCACTACAGCGTGTCCCACTCCAACTTCACCGTCGTAAAGAGGATGCTGCTGGCAGATGTGTGTAACGTGAACAAGCAGAACAAGGCAGGATATACCCCCATCATGCTGGCTGCCCTGGCTGCTGTGGAGGCCCCAGAGGacatggaggtggtggaggagctcTTCATTAAAGGAGATGTTAATGCCAAGGCCAGCCAGGCTGGTCAGACAGCCCTGATGCTGGCAGTGAGCCACGGCAGGATGGACATGGTGCGGGCCCTGCTGGCCAAGGGGGCAGAGGTCAACCTTCAGGATGATGAGGGCTCTACAGCTCTAATGTGTGCCAGCGAACACGGCCACGCTGAGATAGTCAGGCTGCTGCTCGCCAAGCCAGGCTGTAACGCCACCCTGAGTGACAGCGATGAGAGCACGGCCCTGTCCATAGCTCTTGAGGCTGGACATAAAGACATAGCAGTGCTGCTCTATGCCCATGTCAACTTCTCCAAATGCCAGGCCGGGGGAACCCCTCGTCTCGGTAGAAATACACCCCCCAGTTCCGCTGGAAGAGCCGTCTTTGAATGAAACTACCCGCAAGCCCCTCAAACCTCCACCCTTGCTGCTACACATAGACGTATGCTTAGTGTATGGAATCATTTGTGAAGGTTCTATGTGGCCCTTATATAGGGTTTATGAAGGCTTCAAAGTTTACGTTCGTTTTAAAGTTGATGCCCTCGTATCCAAGCACTCAACAAGCGATCTGAGACCACAATTGTAAATGTTAGCCTAATGAAACGAACGAATGATGTAGCCTATATGGACTGCCTCTTCTCTTGTCCAGGCTGACAGCCTGAAACTTAGAGGTTGCTAGGCAAATCACTCTCCTACAGTAATTATATCCCCACGACCTGTGGCCTTTCTTTGTATGAGTTTAATTTCTGACATTTTAGTCTCTAGATTGAATACATTGCATATACACGCAGATAATTTCATTCTATGCCCTCAAACAATATATTTGCATATATTTTTGATGTGATTGTCATTGTATATATCATATATTTAAGCCCATTGGAAGTACAGTTATGCATTTACAATTAGTATATTAGTGTTAAATGTTTCATTGTTAGTATAATGCTCTGTGCCTTATGCTTTTAATTAATACAATAAACTGAAGTACCTCAATA

Function

GO: NA

KEGG:

id description
K22808 KANK; KN motif and ankyrin repeat domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424233 lncRNA upstream 19799 17171400 ~ 17171617 (+) True G373143
TU424227 lncRNA upstream 29358 17161620 ~ 17162058 (+) True G373137
TU424225 lncRNA upstream 29923 17161267 ~ 17161493 (+) True G373135
TU424223 lncRNA upstream 32453 17158706 ~ 17158963 (+) True G373133
TU424222 lncRNA upstream 32773 17158310 ~ 17158643 (+) True G373132
TU424248 lncRNA downstream 19583 17236769 ~ 17237405 (+) True G373157
TU424415 lncRNA downstream 28199 17245385 ~ 17245802 (+) True G373293
TU424416 lncRNA downstream 28726 17245912 ~ 17246427 (+) True G373294
TU424439 lncRNA downstream 47980 17265166 ~ 17265396 (+) True G373317
TU424476 lncRNA downstream 73349 17290535 ~ 17290797 (+) True G373353
XM_021601254.2 mRNA upstream 43638 17126356 ~ 17147778 (+) False LOC100136246
NM_001124510.1 mRNA upstream 43638 17131710 ~ 17147778 (+) True LOC100136246
XM_021601970.2 mRNA upstream 65639 17119787 ~ 17125777 (+) True atp5fa1
XM_036976540.1 mRNA upstream 119877 17019587 ~ 17071539 (+) False LOC110522812
XM_021601963.2 mRNA upstream 179405 16995396 ~ 17012011 (+) True st8sia5
XM_036976967.1 mRNA downstream 18626 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA downstream 18629 17235815 ~ 17242911 (+) True LOC110523353
XR_005051669.1 mRNA downstream 510335 17727521 ~ 17775607 (+) False tnpo1
XM_036976968.1 mRNA downstream 510650 17727836 ~ 17778710 (+) False tnpo1
XM_036976969.1 mRNA downstream 574674 17791860 ~ 17871592 (+) False LOC110523357
TU423600 other upstream 309231 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 309231 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 452916 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 970483 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1396294 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 486927 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 850257 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2766075 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3374294 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3526398 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile