RNA id: XM_036976966.1


Basic Information

Item Value
RNA id XM_036976966.1
length 1797
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110523353
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17235812 ~ 17242911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCAAAAATCGTTCATGAAAAAAAAATGGACCCGATAACTTTAACAGGATCGGGGGAAAAAAAGCGTCTGGCAACAGTCGATATTAAAACATGCAGAGGCAGACGAGCTTGGGGCCTTACTGAGAGGAATGAGACTGcagcagaggggagaggagagggagagctgcCTACTGCAGCCTGCCTGCcacacagagtcagagacagatgACTACTAGTATTATCACGTTATTTTCCCCCGCTCAGCTACCCGTTGATTTGTGTATGAAAACCTAGCGCTTTTCTTTTACTCCTGCATGCTTGCCCCCCTTCTGGGTTTCTGCTTTTCGAGTGATCAGCTGATGAAGAGGCTAGCAGCTCGCCGCTATGCTGGTTTGCTAATTCTCTCCCCTCCAGCTGCAGCCGCAGCCCATCCAGCTACAACCCATTCTGATCCACAGAGTCAGACTGCAGACTGCAGCCAGGAGAACGGGGCCTTGGAGGACATGGAGGAGGACATCAGCCTAAAGAAACGGAAAGGTGATCACCATGGCGACAAAGACTCTGAGTCCCGAGACTCCGGCCAGGAGGCTGGAGGTGAAAAGGTCAAGAAACGCAGAGGTAGACCTCCGGCAAAGAAACTGCCCCCCAACCCTCCCGAGCTCACCAAGCAGCTTAACACACTGGTGGACATGGTTATCAACTACAAAGACGGGTTGGGCCGTCAGATCAGCAAAGGCTTTGTCCAGCTGCCTTCTAGGAAGGAGGTGCCAGAGTACTACGAGTTGATCCGCAAGcctgtggacttcaggaggatCAGGGAGCGTGTGCGCAATCACAAGTACCGGAGTGTGGGAGATCTGGAGAAGGACATCATACTGCTGTGTCACAATGCCCAGACCTTCAACTTGGAGGGATCTCAGATATTTGAGGACTCAATCGTTCTCAAGTCTGTTTTTGAGAGTGCACGACAGAGGATCGTCATTGACGATGAGGAGAAAAAGGACAGCACTGCCATCTGTGACGATGGAGGTCGAGACAATCAGTTTGGTTCATCAGAAGTGAAAACGGTGACAAAGCAGGTGAAACAGAGGATGAAGAAAGAAGAGCGGAGCAGAAAGATGAAGGTCAAGAAGACAGTCTACAGTGATGTAGACAGCGATGAGGATCTGGAGGACAATACAGCTAAAGATGAGGGTTGACCTGGAGGACCAATGCTAGTTAATttatcctctttctttctctccgcTGTCACTGTTTTTGCAATGCAGCTTATTAGTTCTCACCTTGATAAAGATTTGTCTCATCTCAAGTCAAGAAGGCTACTCAAAGAAGGAATTTACATACCTAATGATGTTGGTCCTCAAGTAATTCATGCAGCCTTAAACTTTCATGTCTCTTTACTATTATTTTGCCTTTTTGTTCTTTGGGATTTTATGGTGTTGCTCTCTTGGTCCTCATATGGAAGCTATTGTGTGTATCCTTAATGCTTAACCAGAGGTTATCTCCTACCTCTTTTTTCAtgaattgtttttgtatttgaaaatgttattactgtatgtgtgaaatGACTTCATACGTCTTGGAGCATGATGATGTATTTCTGCTAAGACGGAGACCGCCCTCAGAGAGTGGCGCATGTTGATGACATCaatatatgttgtgttacagGTGTGGGAGATGGCAGAAAATGGTTGGTCAGTTCTtcaatatgactaggatggacACTACTGGATTGTTTCAAATCTCAAAATGTGTGGATTTAAAATGAAATATGATTCTGTAATAAAACTCCAAATGGGAGAATTGTATTTGAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424234 lncRNA upstream 5535 17172353 ~ 17230280 (+) True G373144
TU424233 lncRNA upstream 64198 17171400 ~ 17171617 (+) True G373143
TU424227 lncRNA upstream 73757 17161620 ~ 17162058 (+) True G373137
TU424225 lncRNA upstream 74322 17161267 ~ 17161493 (+) True G373135
TU424223 lncRNA upstream 76852 17158706 ~ 17158963 (+) True G373133
TU424415 lncRNA downstream 2474 17245385 ~ 17245802 (+) True G373293
TU424416 lncRNA downstream 3001 17245912 ~ 17246427 (+) True G373294
TU424439 lncRNA downstream 22255 17265166 ~ 17265396 (+) True G373317
TU424476 lncRNA downstream 47624 17290535 ~ 17290797 (+) True G373353
TU424487 lncRNA downstream 56052 17298963 ~ 17299314 (+) True G373364
XM_021601976.2 mRNA upstream 18629 17191416 ~ 17217186 (+) False LOC110523352
XM_021601977.2 mRNA upstream 18629 17191416 ~ 17217186 (+) False LOC110523352
XM_036976965.1 mRNA upstream 18629 17191416 ~ 17217186 (+) True LOC110523352
XM_021601254.2 mRNA upstream 88037 17126356 ~ 17147778 (+) False LOC100136246
XR_005051669.1 mRNA downstream 484610 17727521 ~ 17775607 (+) False tnpo1
XM_036976968.1 mRNA downstream 484925 17727836 ~ 17778710 (+) False tnpo1
XM_036976969.1 mRNA downstream 548949 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 548949 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 548949 17791860 ~ 17871592 (+) False LOC110523357
TU423600 other upstream 353630 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 353630 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 497315 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1014882 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1440693 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 461202 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 824532 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2740350 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3348569 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3500673 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile