RNA id: XR_005051669.1


Basic Information

Item Value
RNA id XR_005051669.1
length 2849
RNA type mRNA
GC content 0.52
exon number 22
gene id tnpo1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17727521 ~ 17778710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacaatTGTTTTGGGGTTTTGTGATGTAGTTTTCCACCTTTTCTGCAATTAATttttttgttgtggttgtagtacAATAGGTGGCGACATGCACATTAAATGTATGCGAAcacaggagaagaagaggaaggaactGAGTGGGATAGAGTGGAATAGAGTGGATGACGAGCACTAGGACCTTGCAGACGTCACAGCACAGTTGGGTCTTGTAAATGCGCCATGAATCTGTATGAGTAGCTGTAAAAACGGAATGTCTCTGTGCTGACAGGCCCAAGTCTAACGTTATAAATTCAACACAGTAGCATTTGAGGAAGAAAGACTACGATATATCGGCAAACCAAGATGGAGTGCGAGTGGAAACCAGATGAGCAAGGACTTCAGCAAATTCTACAGCTTTTGAAAGAGTCCCAGTCTCCCGATACGTCCACTCAAAGATCCGTCCAGCAAAGATTGGAACAGCTCAACCAATACCCAGACTTCAACAACTACTTGATATTCGTGCTGACGAAGTTGAAATCAGAAGATGAGGCGACCCGCTCTCTTAGTGGTCTGATCCTAAAGAACAATGTGAAGGCCCACTACCAGAACTTCCCCAATGGAGTGTCTGACTTCATTAAGAGCGAGTGTCTACAGAACATTGGAGACTCCTCGCCCCTCATCCGGGCCACCGCGGGTATCCTCATCACCACCATTGCCTCCAAAGGGGAGCTGCAGAACTGGCCCGAGCTGTTGCCCAAACTCTGCCTCCTGCTGGACTCTGAGGACTACAACACCTGTGAGgGGGCGTTTGGCGCTCTTCAGAAGATCTGTGAGGACTCAGCAGAGATCTTGGACAGTGACGTGTTGGACCGTCCGCTCAACGTTATGATCCCAAAGTTCCTGCAGTTCTTCAAACACAGCAGCCCCAAGATAAGATCTCATGCCATCGCCTGCGTCAACCAGTTCATCATCAGTAGGACTCAGGCCCTAATGCTGCACATCGACGACTTCATCGAGaACCTGTTTGCCCTGGCGACTGATGAGGAGCCAGAGGTGAGGAAGAACGTTTGCAGAGCTCTGGTCATGCTGCTGGAAGTCCGCATGGACCGTCTCCTACCGCACATGCACAACATCATAGAGTACATGCTGCAGAGGACTCAGGACCAGGATGAGAACGTGGCTCTGGAGGCCTGTGAGTTCTGGCTGACACTGGCTGAACAGCCTGTCTGTAAGGATGTGCTGTGTAACCACCTCTCCAAGCTGATTCCAGTGCTCGTCAACGGGATGAAGTACTCCGAGATCGACATCATTCTGCTCAAGGGTGATGTGGACGAGGATGATGATGAGGCCATCCCTGACAACGAGCAGGATATCAGGCCCAGGTTCCACCGCTCCCGTACCGTTGCCCAGCAGCACGAGGGCGACCGCGATGGCATCGAGGACGAtgacgacgatgatgatgatgatgacctgGACGATGATGACACCATCTCTGACTGGAATCTCCGGAAGTGTTCAGCAGCAGCGTTGGACGTGTTGGCTAACGTGTTCAGAGATGACCTGCTCCTCCCCATCCTGCCTCTCCTCAAAGAGCTCCTCTTCCACCCAGAGTGGGTCATCAAGGAGTCTGGTATACTGGTCCTGGGGGCCATCGCTGAGGGTTGTATGCAGGGTATGATCCCCTACCTGCCAGAGCTCATCCCCCACCTGGTGCAGTGTCTGAGTGATGAGAAGGCCCTGGTGCGCTCCATCACCTGCTGGACCCTGAGTCGATATGCCCACTGGGTGGTCAGCCAGCCTCCTGACACTTATCTGAAGCCACTGATGACTGAGCTCCTCAAACGCATCCTGGACTCCAACAAGAGGGTGCAGGAGGCTGCCTGCAGTGCCTTTGCCACTCTGGAAGAGGAGGCGTGTACAGAGTTGGTTCCCTACCTGGCCTACATCCTGGACACTCTGGTGTTTGCCTTCAACAAGTACCAACACAAGAACCTGCTTATACTGTACGATGCTATAGGGACGCTCGCTGACTCCGTTGGACACCACCTCAACAagccgGAGTACATTCAGATGCTGATGCCTCCACTGATAGCAAAGTGGAACCAGCTGAAGGACGAAGACAAGGATCTGTTCCCTTTACTAGAGtgCCTGTCGTCAGTAGCCACATCTCTCCAGAGTGGTTTCCTGCCCTACTGTGAGCCTGTGTACCAGCGCTGTGTCAACCTGGTGCAGAAGACCCTCGCTCAGGCCATGcTCCACCAGTCCCAGCCAGACCAGTACGAGGCTCCTGATAAGGACTTTATGATTGTGGCTCTGGACCTGCTCAGTGGACTGGCCGAGGGGTTGGGCGGCAACATCGAGCAGTTGGTTGCCCGTAGCAACATCCTCACGCTCATGTACCAGTGCATGCAGGACAAAATGCCTGAGGTGCGGCAGAGCTCCTTTGCTCTGCTGGGTGACCTGACTAAAGCTTGTTTCCAGCATGTAAAGCCATGCATCGCTGATTTCATGCCTATACTAGGCACTAATCTGAACCCAGAGTTGATATCAGTGTGCAACAATGCAACGTGGGCAATCGGAGAGATATCTATACAAATGGgGGCTGAGATGCAGCCCTATGTGACCATGGTGCTGCACCAGCTGGTTGAGATCATCAACAGGCCCAACACCCCAAAGACCCTGCTGGAGAACACAGGTGCACCTCTCTAAGGAACATAAGAGACAATGAGGAAAAAGACTCAGCGTTCCGAGGCATCTGCACTATGATCAGTGTCAACCCTGGAGGAGTGGTACAGGACTTTATATTTTTCTGTGATGCAGTGGCCTCGTGGGTAAATCCAAAGGATGATCTGCGAGACATGTTCGGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424947 lncRNA upstream 742 17726572 ~ 17726779 (+) True G373775
TU424946 lncRNA upstream 1034 17726245 ~ 17726487 (+) True G373774
TU424891 lncRNA upstream 5112 17718833 ~ 17722409 (+) True G373727
TU424894 lncRNA upstream 9254 17717315 ~ 17718267 (+) True G373730
TU424887 lncRNA upstream 10480 17714652 ~ 17717041 (+) True G373725
TU424885 lncRNA downstream 607 17776214 ~ 17778203 (+) True tnpo1
TU424973 lncRNA downstream 3301 17778908 ~ 17779961 (+) False G373790
TU424968 lncRNA downstream 3676 17779283 ~ 17779887 (+) False G373790
TU424967 lncRNA downstream 3781 17779388 ~ 17779887 (+) False G373790
TU424971 lncRNA downstream 3781 17779388 ~ 17780141 (+) False G373790
XM_036976967.1 mRNA upstream 484610 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 484610 17235815 ~ 17242911 (+) True LOC110523353
XM_021601976.2 mRNA upstream 510335 17191416 ~ 17217186 (+) False LOC110523352
XM_021601977.2 mRNA upstream 510335 17191416 ~ 17217186 (+) False LOC110523352
XM_036976965.1 mRNA upstream 510335 17191416 ~ 17217186 (+) True LOC110523352
XM_036976969.1 mRNA downstream 16253 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 16253 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 16253 17791860 ~ 17871592 (+) False LOC110523357
XM_036976972.1 mRNA downstream 16253 17791860 ~ 17871592 (+) False LOC110523357
XM_036976973.1 mRNA downstream 16253 17791860 ~ 17871592 (+) False LOC110523357
TU424889 other upstream 19764 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 845336 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 845336 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 989021 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1506588 16219606 ~ 16220933 (+) True G372281
TU425343 other downstream 291836 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2207654 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2815873 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2967977 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 3055651 20831258 ~ 20836559 (+) True LOC110522817

Expression Profile