RNA id: TU424885


Basic Information

Item Value
RNA id TU424885
length 1990
lncRNA type sense_over
GC content 0.39
exon number 1
gene id tnpo1
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17727521 ~ 17778710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGCAGAGGCAGTCAACGCCCCCCAAGCAACAGGCGAGGGGGACACGGGGGAACCAGCAGGCTAACTTAATCAAGGGaggaaacatttatttaatcatttCAACATCTCATTCAGAAATGAAAAGACATTGTCAGCGTAGCCATTTTTGTtttctctttttattttatttttcattcgAGCTCTCCAGCGACTCTACTACTGAGTGGACATTTGAATCAAAATGCAGGAAAAAAACCAATGCAAAACTTTGTAAATGCTTCTGTCGTTTAGTTGTGGTAAAATCATGGCTTTATActtaccgggggggggggggggggggtagtgctGATTGAGGGTCCTATTTCAGTTAAGAGCTTTTAAATCTATTCGTATCGACCGGAAAGTGCCACTCAGAGATAAGTGTAGGGGGAGGGAGTGTAGAACTAGAGAGAATGATACCGACCATAGAATTGATATGGGGGTGGTTATAAAATAGCGTAGTGGGCATAGAAATGACATTAAAAGTCTCAAAGAAAACAACATAGCAGCTGTCCTCAACTGCCAGGACAGCTGCTAGCCAAGCAACCACAACAGAGGTAATAGACTAAAGAAAATGCTGATATTATCGTATTTATCTAACCAgctattttttttggggggggggggggggggggacgacactgCCTTTGCATATCTTCGAATAACAATAGCCTGTCTTTTATTGTAGTCATCAATCAAAACAATTGCGTTGAGTTAATGAAAGAAAAATTGGTAGTGGCATATTTAAAGTAATAGAGTAATAAACAGTATTTTTATGGCAGGTCAGAAGCTGTGTTGAATAAACCATTATGTCAAACACGTCAGACAGAAAGAGTGCATATGATTCTATATTTGTTGTGGTTGAAAGTGACTTGTCTTAAAAACAGGAAAATAACTAAGTAGCATGCTTACATCAAAGTGGGAAGTGGGTAAGGGGGGTGTACATCAGTAGAGTGATCTGTGTGTTGCATCATCAGATAGTTGTGGTATTTCTTGCATAGCCTTGTGATAAGGTTTCTTAAACAAACATGTACTTTGTCCTTTTTCAGTTTTCTGTCCGCCCACCACCCCCTATGTTTACCAGAGCTTTTCCAGTCAGTGTCTAGCATGAACTGGGTTTACATACATACAATATAGAAACAAACAAGTCTGATATTGATATTCTCATCTAGTTGAATCCATATACTGTAGCAGGGTTTTGGTTGTGATTCTAAAAAGAGACCTTGAACACTGCTACATACATGTTAAAACTCTGAGGTAAACTCTCAGGCTGCCTCTGTCCTGTGGTGTGGAAGTGACGCGTTCTGTGTGCATGGATGTTTTACTAGCTGCCATAATATCAGCTTTCCTGAccccatattgttttaaataTCAAATTCTGTCTTTCTCACATTTGTGAAAACAGTACTTGGGCTCGATTGTGGCAACGTAAGACTATATTGTTTAACAGTGTCAAAGGGACGGGGGTATGGAAACAGCATACAGGGCTTTAGCTGAAAATGTTCACCCTTTTGTTATTAGGACTGTAACACAAGTCCTCCTGTCTTgatagtgtgtctgtctgtgacctTTGTTGGTTGTCAATCCAAAACTCAACAGTAagcaattgtaaaaaaaaagaaaagaaaaaaaaaagaaaaaaaagttttatgTACTGTGGTttttttattattgttgttgGTTTGCTTTTTTTTGTGAAAAGCATGATCTTTGAGGATGATTGTAATGACTGTTTTGAATGCAAGGTATTCGAATGCTTGATTCCTTGCATGTTGGTGGTCCTTTTACATCCCAAACTAGACAGGGGGAGGTGCATTTCAATTGAACTAAAAAGTTAAGGAAATTCTTATTTCTTCACTACCCCATTTCGCTGACATACAATAtcagacttttattttgaaagttcAACTTTTATCTCATACATACCTGCAGGACGATTTTCCCCTTAACATATAACCCACGTGCACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424960 lncRNA upstream 10757 17764702 ~ 17765457 (+) True G373788
TU424958 lncRNA upstream 20631 17755140 ~ 17755583 (+) True G373786
TU424947 lncRNA upstream 49435 17726572 ~ 17726779 (+) True G373775
TU424946 lncRNA upstream 49727 17726245 ~ 17726487 (+) True G373774
TU424891 lncRNA upstream 53805 17718833 ~ 17722409 (+) True G373727
TU424973 lncRNA downstream 705 17778908 ~ 17779961 (+) False G373790
TU424968 lncRNA downstream 1080 17779283 ~ 17779887 (+) False G373790
TU424967 lncRNA downstream 1185 17779388 ~ 17779887 (+) False G373790
TU424971 lncRNA downstream 1185 17779388 ~ 17780141 (+) False G373790
TU424962 lncRNA downstream 1366 17779569 ~ 17779887 (+) False G373790
XR_005051669.1 mRNA upstream 607 17727521 ~ 17775607 (+) False tnpo1
XM_036976967.1 mRNA upstream 533303 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 533303 17235815 ~ 17242911 (+) True LOC110523353
XM_021601976.2 mRNA upstream 559028 17191416 ~ 17217186 (+) False LOC110523352
XM_036976969.1 mRNA downstream 13657 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 13657 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 13657 17791860 ~ 17871592 (+) False LOC110523357
XM_036976972.1 mRNA downstream 13657 17791860 ~ 17871592 (+) False LOC110523357
XM_036976973.1 mRNA downstream 13657 17791860 ~ 17871592 (+) False LOC110523357
TU424889 other upstream 68457 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 894029 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 894029 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1037714 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1555281 16219606 ~ 16220933 (+) True G372281
TU425343 other downstream 289240 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2205058 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2813277 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2965381 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 3053055 20831258 ~ 20836559 (+) True LOC110522817

Expression Profile