RNA id: XM_036976985.1


Basic Information

Item Value
RNA id XM_036976985.1
length 8902
RNA type mRNA
GC content 0.51
exon number 36
gene id arhgef28a
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18067350 ~ 18177035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGGAGGGGCTGGACCGTGGCGCGGGGTGGAGGACAGGACGGATTGAACGAAGCCTGGCAGCCGTGCTTTGGAAAACCCACTTCTCCAAAAATAAAGTTTGACTACATTCTTCTTACCGAACGGAAGACTTCACAGAATAGATTCGCTTATTTTTCTCCGTTTTTTTTACCATTGCTTATTGGGGAAATGACTAAACCATCAGACTTTTAGGAGAAAATACATTGGAAAGTGTCGCTCAACTTTCTACACAGGAAGCAAGGTCTAACTGCAGATTGCGGACGACTCAGATGCTCAGAACATGGAGCTgaacagaggagaagtacctcTATATggccAGGTGGAGGTCCGTGCTGTGTTACAGGTTCCAGATCTGGACAGGGAACCAGAACAGACAGAGTTCTATGTGGTTCTAGAAGGTTCCAGACTAGCCCATGTTGCTGTAGTTAAGAGAGCGGAGGATGGAGAGTCTCTTTGCTTCACAGTTCCTGgtCACGACCTCCAAGAGACCGCCTCTGTCACAGTGTATCGTCACACAGAGGACGGAGCCAAGCCTTGTGGAGGCGGGGCCTCCCTGAGGTACGTCTGTGATTTGCCACAGGAAGTGGCCGAGTACCTGCTAGCCAACAGCGACTCTTTGAGTCCCCAGAGCCACCTGGAGGTTCTGAGGAGGGTCTCAGCAGCTCCAGGGGAGGGGGACATGGAGGGTGACATGAGCGCCGGTCCAGGAAAGGAGCACTCTCTGGGGCAgacagagcaggaggaggagggggttagAGGTGGGAGACCCAGACCTGATCCACTGATAGAGTGTCATCTCAGGGAGATGGATGAGAGGATAACCCAGGCCGTGGCTAACCTGAACTACCCTTTGGAGTGGAGCGGCAAGGCCAGCCAACCTAGAGAAGAGCTCCTGCCCAGGGAGGCTCTCCTCCACCTTTCAGTGCGTCTGGGTTTGCTCCATCTCTCCCGCTTTCTAATTGGCCAGCCTATGGGTCAGAGGGCACTGACCATGCCCAATGAGGAGGGGGAAACACCCCTCCAGCtggctcagaggagaggagaccactcCCTCTTTATGGCACTCGCTACTTCACCTTTCCCTCAGAGGTCTCCCCTTGTCGGGGTGTGGTGTGTATGGGCAGATAGCACCCGTGTACTGAGGTTCTGTCCTGGATCTGACTGCCTCTCCCTCACCTTCCTGGGGGGCCCTGAGAGCAGTGTTCTGggcaacatcctggtcctcagaGAGAAACTGATGGACCACAACATCCTCAGACAGATCTCAGCACTGAGAGGTGATGTTCAGATGGAGGACAGTTACGGATTGGACGTCCATAGAAGTGATGCCAGTGACGGAGGTCTGGGCAGGGGGCTGCCAGTTAGATACCTTACTCTGGTGGATAGTGTTTTTGAAGATCAGCTTGTTCTCTCTCTGGATGATGATGAGGAGCTTCCAACGTTACAAACAGTAAAGTCCAAGACGACCCACCCCAGAGGAACCCAGAGACAGTTCTCTCACTCTGCTGCTGCAGACACATTAGCCTCCATCATCAATGGCAGGAGTCAGCTTGACACAGAGgtGGATGACCTAAGGGCTAATGTCAGTGTTGCTGGGATAACGAGGGACAGCTCTGTGACTGTCAGCAGGGTGTGGGACTCGGTGGCCTCAGAGTGCCTGCTCCAGGccacctccacccctctacctccaTTGGGACTAGAGGAACAACAGTCCCCCTCCGTCTCTCACTCCCCCGCTCCCTCACCTTCCCCCGCTGACCGAGCCCTCGCCCGACTCAACAGCAACTCCCACTCTTACCTAACCAATCAGAGAGGGAGCCCGCCTCTGGAATCCCCTGACCTCAGCCCCAGTCTGGTAGCTCTAGTGATGGACagtgagggagatgaggaggggttCCTGGTGaagtcttccctctctcccatctctcccctgacctctgaccctcgTAGCAGCGGGGACGAGACCTCCCCAGACCTCacctgcacacgcacacactccgcGTCCTCAGACGGCGACCCCCCCCTCGCAAAGGATATGGGCAACCAGGGGATCAGACACCGCTCCTACTCCTACTCCTCCCCCAAGATCAGCCTGCTGCCCCCCCGCTTCTCCTGCAAAACCTTAGCCACGCCTGCGACCTCTGACCTCAGCCCAGAACAGAGAACATTCAGTCTATCAGAGCAGCCTCTCGAAAAAAGGGAGTTAAGGTTTCGTAAGCGTGCCCAGTCTGCAGACGACGAGGGCAGCGTTGAGCTGGCAGAGTCCATTCAACACCTCACCCTCTCAGAGTTCCTCAAAGAAAttgaagaggaggagtgggacaagTACAACATCCCCTCCAAGGTGGAGTCAGAGAAATACAAAGTGATTCGTACCTTCAGCTTCCTCAAGAGCAGGATGTCCACCACTCGCAACAAGAACAAGggaaaggggaaggagaaggagagagagaaggggaaggagaaggagagagagaaggaagggacagATAAGGACAAACAGCAGAATGGACATCGTTTCTCCACGGGTTCCTGTGCTGGTCCCAccgtctgtctggtctgtgacaaACCTGCTACTGGCAAGGACCTTCTGCACTGCTCCTgttGTACAGTCATGGTCCATAAGGGTTGTAAGGACTCTGCTCCCCCGTGTCTAAAGAAACTTCAGGATAAGTATGCAGTTACTATGGTGAAGAACCGAACAGCATCCCTCCCGCAGAACTTCACAGTGCGAGACAGTCCCTCTCCATGTCCGATATCCACCTCAGCCTCTCTACCTATGATGAgccagagggacaagagggaaaCAGCCtccctccccaaccctctctccaGGAGCGTCCCTTCTGCCACAGACAGGCTTAGTGAGAGTCCAGAGGCGGAGTCTGACAGCAGGTGGTGTCCTGGCCAATCAGAGGAGCTTCTGCAGACCACCGAGTCGTCCACGTCCACTGACTCCTCCGTCGGAGAAGTTTGTCCTTCCACTCCCCAAGTAGACTGTGTGGACGCTAGTCTCCATGGTGACCTGGATGCTGATGCTCTGGACTACGAGGCTGAGTCTTGGAGTCTGACAGTGGAACACACGTTCTGTAAGAAGCAGGACAAACGGGTGGTCAAGAGACAGGATGTTATCTATGagTTGATGCAGACAGAGATGCACCACCTCCAGACACTGAGGATCATGGCTGAGGTGTTTCGGcgagggatgagggaggaggtTCAGTTGGATGCGGGTGCCTTGGACCGTGTCTTTCCTTGTCTGgatgacctcctcctcctccaccacaaccTCTTCAACGCCATGAGGGAACGCCGCCACAGCTCCGCCAAGCCACATGGGGACAGGAACTACGTCATAGTACGCATCGGCGACATCCTGTTGCAACAGTTTTCTGAAGACAGTGCAGAGAGGATGAAACAGGTGTATGGAGAGTTCTGCAGTCATCACACTGAGGCAGTCACCTTCTTCAAAGAGTTACAGCAGCACAACAAACGATTTCAGACCTTCATCAAGCAACAAAGTAATAACTATTTGGTCCGGAGGAGAGAGATCCCAGAATGCATCTTGTTGGTGACCCAGAGGATCACTAAGTACCCTGTTCTGCTGGAGAGGATTCTGCAGTACACTCAGGtggACAGTGAGGAGCACATGGACCTTTCCAGAGCTCTGGTTCTGATCAAGGAAGTGATCGCGGCAGTTGACCTGATGGTCAGTGAGTTTGAGCAGGGTCAGCGGTTACAGGATGTTCTGAACAGGATGGAGAATCGGAGCTTTGCCAAGCTGAAGAACGGGCACACCTTCAGAAAGCAGGATGTTCTGGGGCCAGGCCAGACCCTCAAACACCAAGGCCTGTTACTGTGGAAGACCGCCACTGGACGACTCAAAGATGTCCTGGCTCTCCTTCTGACAGACACACTGATCTTCCTCCAGGAGAAAGACCAGAAGTTCATATTCGCTGCTGTGGACCAGAAGCCCCCAGTGATCTCTCTCCAGAAGCTGATCGTCAGAGAGGTAGccaatgaggagagagggatgtttcTGATCAGTGCGTCGGCCGCAGGGCCAGAGATGTACGAGGTCCACACTTCCTCGAAAGACGAACGCAACACCTGGATGAGACTAATCAGAGAGGCAGTAGAGAGCTgtccagaggaagaggaggagaacactAATGAgtcagaagaggagagaagaacagcTGAGGCCAGAGTCCAGAAGATACACAAACTACAGGAGACCCTATCCAGTCAGGATTATCAGATATGCTCCAGTCTGGAGGAGAAGCTACAGATCTATGCTGACCTGTCTGTCCTGAGGGGCGAGGCCCCCCAGGAACCACACCCTGAGCCACACCTACTGGTCCAGCCAAACCCAGAGGAGGTGCCCCAGGCTGCAGTACTGCTTACTGCCGCGCTCAGAGAGGctgagaACCTGAGGACCACTCTGTCCTCGCTGACCTTTTCCCCCTTCAGCCCCTGCAGCCCTCCCAGGGACCCCCTGTCACACCCTGTGTCCCCAGCCTGCCCTCCTAACCCCCTGGACACCCCCTCAGATGCGGAAGCCTCTCTTGGGGACCCTAATACCATGGATGGGGAGTCAGCCTCCCAAGTCCTTGTACTGCAGTCCCTGACTAATAATATCAACCTTAAGGTGTCCCACAGTGTCCAAAGCTTGACCCAGTTACTCTATAGTCTACAGGCGGCGGTAACCATCCAAGACAGTTTCTACGAGGTTCAGAAGTTCCTCCTCCATGAGCGTGACCGCCACTCCCCCCGCTCTCCGAGACCACACACCCCATGTCTCCGTGGCAACGCTCTGCAGGAGCAGGAGAAGCAGCGTAACCTGGAGAAGCGCCGTGAGGAGGTGGCGGCAGCGGTACGGCTGCAGGGCAGGCTGCACCAGGAGAGACAGCGGTGGGAGAGGGAGTGCCAGGCGCGCCACAGCCAACAGGGGGAGCTGGAGAGCaggctggaggagagggagagacagtgccACCTGGAGGCTGAGAGGCTGAAACAAGAGCgggaagagctggaggagcagCTGGAGGAGTACCAGCAGAGCctggagaggctgagagagagtcagaggagtgtggagaaggagagggagaggctggaGACCCAGCAGAACCTGCTGCAGAGCTGGAGACACAGCCGACAGAGGAGCCTGCCTGTCATGGTCATACCCCTGGACCGCTGTCAtcagGACTCACTTCCTTGCCAGCCTGGAGGCCATCTTGACAACGGCGGCTCAGTCTTTGTCAACGAGGCAGCGGTCACCACGGCAATGGGGCTCAACAACCGCCACGTGCACCACCACCTGCAACAGCAGAGAGGGTACGGAGATGACCCTCGAGCCCACAACAGCCTGAACACCCTACTGGCCCGCTCCAGCCACGGACAGACACTCCAActccaccctgacacacacacaccccaggacTGGgcggggggcaccggtgtcaCCGGGTACCTCTACACACCCACAGAGGGACAGGGCTCTGAGCAGAAACCCAACGATATAAACACACACCGCAAAGTGAGGGAGACGTGGTCATTGATGGCAACAGCGGCTGGACAATATCAGGGTGTACCCCCACATGGAGATCCCCAACTGGACCTGTCCTTATTGGTTCCCCTGGAGACGGAGCGTGGGGATGGGGAGGACGTGGGAGAGGAGAACATTGTGTACCTCTGAGGCTGAACCCCCTGAGTCAAAACCAGgacttaaagctggaatccttaatggtgaaactgcTACGTCCGTttgggatattacaacaacaaaggagTTACTACAAACAACAAACACCGTTTTTTCCCCCTTGGACATAATTAGAATCACAGATTTAACATGAATATATGAAGGCTCCGAATCCAAGATTGGACAGTAAATATCTAGGCCTATTGTATATCAACAAGGTTTAAAGAAGTAACAGGACTGGCACATACAGAAATCTCTCATGCTTTGTCTCTCTGCCCGCCACGTCTGTGTCAGGTACCCTCCATATGTGTCGCCAAGTGTTGTCAATGAGAGACACTTTTATAGTGCTACATGTTTATGTGTCCatatgtgcagtgtgtgtgtgtgtaacttcatccactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgttgaGAGTTCAACTCCAGGGCTGCCATCGGGCCTGAGGCCCTCCAATGACAGTTACCCTGACCAACCCTGCTGCctgccttccccctctctcctcacccctgtatctctctgtatccctgcCTCTCTGTATCCCTGCTTCAGTCTACCTCTCGTTTTCTCCCTTGTCCTCTAAGCCCAATCTCTCCAGGACTATTTATTAGGCTCTCCCAGAATGAAATACTGAGGAGAGTCTTCTCTTTGTTACcgcagggggaaagagagagagcagagaggggctGGCATCACTGTAGAATCAGGCTGAATCTGTCCAGTTGCTCTGTGGCTGATTGTCTGGCCAGGAAATAAACAGCTGCTCGCCCATTCATCAGACAAGCTCTATTTAGAAGGTGAGCGGGATTCTGCAAACACATTAGTCATGAAGGATGAGGTGAAGCACCATGATCAGAAGGGATTTGGTCCCTTGGTTTCTCAGACTGTCTGGCTCTGGCTACGCCCGGACAGCATCATTTGTTTTTACCCGAAGGACTTTTTATTGTTTTGAAAGAGTGTAAAGGTATTGTGGTTTTAGGAATGATGTTGTGACTGTAGCAATATATCAATACAATATAGGACACTGCACTACCCTGCCTATATAAAGTACATATTTTATTAGGGCCAAACGCATATAGTGGTCAAAAACCATAGGACAGAACATTTCTATACTTTCAATGACCTTTGCTTTTAAAAATGGTTTTAAGTATCCAATCAGGGACAGTGCACTGTACATGTGAAGCATACCAAATATGGCCACATCTCTTCTgcatgatacatttttttttacatcgttttaaaatgtttaatgttTAAATATTCCTTCCAAGGCACATATTTCATAGCACATGATTTATTCCAGTGTGTGTTCAGTTACTTTAAGATTTTGTCTTATGTAAAGTTACCTTACTAATGCATGTGTAGTAATAGTAGCTGGATAGTCAGCCTGGTATCAGTTTATATCAGTGGAGGTTCcatagaggaggaaggggaggaccatcctcctcagtgaatttaataacaataaaaatagtgaaacattgaAAACGTAAtcctttatataaaaaaatatagtaaatctattcacgtcaccaaatagttgattaaaacacactgtttttctatataggtctacagtagcctcaacagcacagTAGGGTAACACCATGGAGTAGCCATAGGACAGCtcgtttccatcctcctctgggtacattgttttattatttttgtatttgattattttacacttattttaccaggtagtttgactgagaacacgttctcatttacagctacaacctggggaatagttacaggggagaggaattaCACCAATACAAAACttatagacttacacagtaataatgACAACTTCCGGAGAATGTCCTCCAATCTATcaaagctcttgcagcatgaactgacatgttgtctacccaatcaaaggatcagagaatgaatctagtgctgaaagcataagctacagctagctagcacagcAGTGCATAaattgtggtgagtagttgactcaacgAGAAAGACAATAGCTGAccagtttttaacaaattaatttcttcaaaaatgaaggagaagcaagagagagagctatatttcTCGTTGtaattttttcactttcacttacttagctagcgaatgcagctagctagtttagcctactcaaacacccagctcaaacagggagggatgctatgttagttagctggctatgactatccaaaaCTGGAATTCTTCCAAGTCAACGTaaacttttggttttattaatttattgccactggggcccactggtgtaactgctaaactgcttgctgtacactgtactgcgtgATTCTCCCGAGTTTAGTAACGCGTTAGTTCTCGTAGCCGTATTGATTACATTAGATactatggtgacaatgatgtaagctgtgtgtagcagttagtgGTTataatatgaaggtttggcttggattttttttttgcctggtcacagacagctggtGTGTTGTGCACTGCAGTCCACAAGTGaaaggaaaaggtgagaggaggagagtgcgtagatgtgagaaggaatacaacaaGTAAAgtaatcatgctgtttgtatgtggctgctatgaaagtgaactgtgtttatgtgtgatcAGGGATGCGTGTATTCATTCCTCCGATTATGTAAGCAAACGGAATGAAACATGGATAAAAATACCTGAatttgtttgcaactgttggactaatgattacaccctagatcagctagatgcaggcaaaagCGTGCGGTATTAAATGTGTCACtttctgtcaccttgattactcaaatctTTCTCTCGACCTGTACACCTacgctacatgaccaaaagtatgtggacatctgcttattgaacatctcattccaaaatcatgggcattaatatggagttggtcccccctttgctgctataacagcctccactcttctgggaaggctttccactagatgttggaacaatgcTGCAGAGACTTTTTTCCATTCatccacgagcattagtgaggtcaggcactgatgttgaaTGATTAAACCTGGCTCGCAGTTgttgttccaattcatcccaaaggtgtttgatggggttgaggtcagggctctgtacaggccagtcaagttcttccacaccaatctcgacaaaccatttctatatggaccttgctttgtgcacggggta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425324 lncRNA upstream 18142 18048939 ~ 18049208 (+) True G374105
TU425325 lncRNA upstream 32736 18033872 ~ 18034614 (+) True G374106
TU425314 lncRNA upstream 56969 18010112 ~ 18010381 (+) True G374095
TU425313 lncRNA upstream 64197 18002824 ~ 18003153 (+) True G374094
TU425044 lncRNA upstream 112560 17912480 ~ 17954790 (+) False G373848
TU425341 lncRNA downstream 2507 18179542 ~ 18181098 (+) False G374120
TU425342 lncRNA downstream 2507 18179542 ~ 18181098 (+) True G374120
TU425539 lncRNA downstream 5444 18182479 ~ 18182694 (+) True G374291
TU425540 lncRNA downstream 5715 18182750 ~ 18183159 (+) True G374292
TU425564 lncRNA downstream 27345 18204380 ~ 18204663 (+) True G374316
XM_021601989.2 mRNA upstream 19719 18040703 ~ 18047631 (+) False btf3
XM_021601990.2 mRNA upstream 19719 18040727 ~ 18047631 (+) True btf3
XM_036976541.1 mRNA upstream 137186 17900493 ~ 17930164 (+) True tmem174
XM_021601985.2 mRNA upstream 188125 17877617 ~ 17879225 (+) True LOC110523359
XM_036976977.1 mRNA upstream 195758 17791868 ~ 17871592 (+) False LOC110523357
XR_002473438.2 mRNA downstream 219293 18396328 ~ 18410126 (+) False LOC110523365
XM_021601996.2 mRNA downstream 219296 18396331 ~ 18410126 (+) False LOC110523365
XM_036976990.1 mRNA downstream 219620 18396655 ~ 18410126 (+) True LOC110523365
XM_021601997.2 mRNA downstream 238739 18415774 ~ 18422258 (+) True LOC110523366
XM_021602001.2 mRNA downstream 310585 18487620 ~ 18506142 (+) False egfl7
TU424889 other upstream 359593 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 1185165 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 1185165 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1328850 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1846417 16219606 ~ 16220933 (+) True G372281
TU427802 other downstream 1806226 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2414445 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2566549 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 2654223 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 2931134 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile