RNA id: XM_021601996.2


Basic Information

Item Value
RNA id XM_021601996.2
length 2179
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110523365
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18396328 ~ 18410126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTGACCATTAACCAAACAAATGCTCGATTTTCAGTGATTTACTGTCTCATGGCTCAATATATAAATAAAGACACGTTTTATATGATTTGCTAGATTAGATTTCGTCCtatttccacattgattcaagcCCCACCCGCTCGAGGCTAATGCAGTCTTGCCAGTTGTCAGTCGACTGGCAACACCATAGCATATCATGTTTGCAACGCTGAAGTTTGCAGCGTTGTTGCTCGCGGTTGTTGTCTGCTGGGCAACGCAAGATTATGATTATAATGACGCTGAAATAGACGAGGAGCCTACTCTGGGTGATTCTCCATATGGATCTCTTTGGCCGTTGCCTCAGAAAGTCAAAATATCCACGGTAGTATTCAAACTCAGCGGTGCTAGCTTCCATATATTCGACGCTAAAGAATCGTCTTCTGGTGCGAGCTGCAGACTTCTTCAAAATGCATATCGAAGGTATGATGAGTACATCTTTACCAGTTCCAGAAAACAAGGGCAAAACAAGAGCAAAAAGGCATTGGCCTCTGACATGTCTGAATTACAGGTGTGGATCACATCAGCTGACTCTGAGTGTGACAGCTACCCCAGTGTGACATCTGACGAGTCATACAAACTGTCAGTGGACTCTCCTGTTGCTGTGCTGAAAGCACCTAAGGTGTGGGGAGCTCTGAGAGGTCTGGAGACTTTTAGCCAGTTGGTGTATAAGGATGAATATGGAGCAaAAAGCATCAATAGGACAGACATTCACGACTTCCCACGGTTTGCACATCGAGGCCTCTTATTGGACACCTCTCGTCACTTCCTGCCCATCAAAGTAATTTTAGCCAATCTGGAAGCCATGGCGTGGAACAAATTCAATGTTTTCCACTGGCACATAGTAGATGACCCCTCCTTCCCTTACCTGAGCCGTACCTTCCCCCAGCTGAGTCAACATGGAGCATACCACCCGTACACACATGTGTACACGCCTTCTGATGTGAAGATGATCATCGAGTTTGCTCGCCTAAGGGGCATTCGGGTTGTCcctgagtttgacacccctgggcaCACTCAGTCATGGGGCAAAGGGCAGAAGGACCTGCTGACCCCCTGTTACTCTGGAGCCAGCCCCTCTGGTTCGTTCGGACCGGTCAACCCCATGCTCAACACCACCTATGACTTCATGAGCATGTTCTTCAAGGAAGTCAACACAGTGTTCCCTGATGCCTACGTCCATCTGGGAGGAGATGAGGTCGACTTCAGCTGCTGGAAGTCCAACCCTGACATCCAGAAGTTCATGGAGCAGCAAGGCTTTGGGATGGACTACAGCAAGCTGGAGTCTTTCTACATCCAGAGGCTCTTGGAtatcatcaccactaccaacAAGGGCTACATGATCTGGCAGGAGGTCTTTGACAACGGTGTTAAGttgaagtcggacacgGTAGTGCATGTGTGGATGGGGAACAAGGTGGAGGAGGAGCTTCAGAAGGTGACGGAGGCAGGCTTCACCACCATCCTCTCCGCCCCCTGGTACCTAGACTACATTAGCTATGGACAGGACTGGCAGAAGTTCTACAGAGCCGAGCCGCTCAGTTTCAAGGGCACAGATGCTCAGAAAAAGCTGGTGATTGGAGGAGAGGCATGTCTGTGGGGAGAATATGTGGATGCTACCAACCTGACCCCTAGACTCTGGCCCCGTGCCAGTGCTGTGGGGGAGCGGTTGTGGAGTGACAGGGATGTGAGGGACCTAAACGATGCCTACAGTCGTCTAGCCAAGCACCGTTGTCGCATGGTCCAgcgTGGTATCCCAGCTGAGCCTCTCTTTACAGGTTACTGTGCACATGAGTGAATGAATGAAAAGTGAAGACCACTGTGATCGTCTTCATGACTTCATTGATGCACTGATACGAGCCAAAATGTGTTTAAAAACAATCCTCATTCCATGTAATGTCACATTGATCTTGTTTTTAGAAAACCATTTGTTTTTATATGAATGTATGATTCAAATTATTaataattacattttagtcaATTCGCAGATGCTCTTACAGTGACTTGCAGTAgttagtgcatacattttcatattttttttatactggtcccccgtgggattCAAACTCTGAAATTGCAAGctccgtgctctaccaactgagccacatgggacttaataataataataaacctttGCAAGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425696 lncRNA upstream 9568 18383161 ~ 18386763 (+) False G374438
TU425726 lncRNA downstream 32094 18442220 ~ 18442478 (+) True G374463
TU425755 lncRNA downstream 71205 18481331 ~ 18481568 (+) True G374488
TU425757 lncRNA downstream 74142 18484268 ~ 18484500 (+) True G374490
TU425758 lncRNA downstream 76259 18486385 ~ 18486613 (+) True G374491
TU425759 lncRNA downstream 76910 18487036 ~ 18487244 (+) True G374492
XM_036976985.1 mRNA upstream 219296 18067350 ~ 18177035 (+) False arhgef28a
XM_036976986.1 mRNA upstream 219296 18067350 ~ 18177035 (+) False arhgef28a
XM_036976987.1 mRNA upstream 219296 18067350 ~ 18177035 (+) False arhgef28a
XM_036976988.1 mRNA upstream 219296 18067350 ~ 18177035 (+) False arhgef28a
XM_021601990.2 mRNA upstream 348700 18040727 ~ 18047631 (+) True btf3
XM_021601997.2 mRNA downstream 5648 18415774 ~ 18422258 (+) True LOC110523366
XM_021602001.2 mRNA downstream 77494 18487620 ~ 18506142 (+) False egfl7
XM_021601998.2 mRNA downstream 77508 18487634 ~ 18506142 (+) False egfl7
XM_021602002.2 mRNA downstream 77509 18487635 ~ 18506142 (+) False egfl7
XM_021601999.2 mRNA downstream 78741 18488867 ~ 18506142 (+) False egfl7
TU425343 other upstream 312966 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 688574 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 1514146 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 1514146 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1657831 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 1573135 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2181354 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2333458 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 2421132 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 2698043 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile