RNA id: XM_021601999.2


Basic Information

Item Value
RNA id XM_021601999.2
length 2212
RNA type mRNA
GC content 0.49
exon number 8
gene id egfl7
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18487620 ~ 18506142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGCTCTTGGCCACGATAGCGCTTGTAATAAATAGCCTACAAATAAATTCAAGTGAAATCTCTTTGTAGTAATGCAACGCGGGGAGTCCCCCTCGACCCGTCGCGGTTGCGAGATACCCAGCTGGCTCGAGCCGGAGGGGGTGCTGCCGCGGGTACCCCCCATGCGCACTTTGACAGTTAGTAGGTTTGTAGGCTACTCACGGAGACGGAACCTGCATCTGGACTGGCAGAGAGATATTACTACAAGGCTATAACACAAGACGACTCAAAGGGAAACGCTCACTAGGCTACTAACTAGCATAGCGAGTGGATTTGACCGAGGTTTTCCGTTTTgctagacatttcacattctggaCAAGGGAACAGTGCGTTGCTACTTAGCTGCACATGGAACAGTTGTAAGTTTAAAAGCGAAAACGAGTATCACTTAATTTCACTAAATTACAAGGAGCACATTGGAATTACTATATCAGACTTGTAGTTGGGATCCTTTTCCTAGAAGTCTAAAACAAGGCTctaacatcagagagagagacacagccacaacccttctccccttcccctcatcctcctttcttctcccattggacagagagagagagagggaaagagcgagtGAAAGTGAGAAAGAAGAGGGAGACATGTACCaaacactcctcctctcctcctcgctcttCATCCTCCATGTGACGGCCACTCCACAGTTCCACGGTCACCACGGGAGGAGGGTGTGTGGCAGAGATATTCATCACAGCAGTGTCATCACGACGACCGAGTCGTTCGTCCAGCCCGTTCACAAACCTTACATCACCCTATGTCAGGGGCACCGCCTCTGTAGCACCTACAAGACAGTGTACAGGGTGGCGTACCGTCAGGTGACCAGAGCAGTGCCAGTCTCACACTCTTACCCAGAATGCTGCCCGGGTTGGCGACGACTCCACTCACACAACTGTAACCAAGGTAATAGGGGTTTACACTCTCCTAGCATCCCGTATGTGTGCATGTTCATTTTTGAttatttctctctgtcctctccagcGGTGTGTGGCCAGTCCTGTGTGAACGGAGGAACATGTTTAAGACCCAACCACTGCGCCTGTCCTCTGGGATGGATGGGTCATCACTgccaaacagaTGTGGATGAGTGCAGTGAGCAGCAGCCCTGTTCTCATCAGTGTGTGAACATGGCAGGCAGCTACcactgtgtgtgtagagagggctACAGGCTGGCAGGAGACACACACTCCTGTGAgaaccttcctcctcctcctcctcctgcctcttcCACCCACCCCAGTCAAGAAGCAGCAAACGATCACAGACCCCCCTCCAGTgatacagGTGGAGGGTATGGGCTGACTGAGAACGTAACAGAGGAGGTCCAGAGCCTGAAGAACAGAGTAGAGCTGCTGGAGCAGAAGCTCCAGTTGGTCCTGGCCCCTTTCACCAGTCTGTTCCCCATGTCGCTGGACGAGGGCGTGTCTGAGAAAACCAGCTTCCTGTCCCACTCCTTCCAGCAGCTGGATCGCATCGACTCGCTCAGCGAACAGGTCGGCTTCCTCGAGGAACGCCTCGGAACCTGTTCCTGCCAAGAGAATTAGAAACAACAGGACTGGGTCACCCTCACCAACCAGATATCTCCACACAAGTCTGAGTCCACAACACAATAACAATAGAAATGAATGCCCCAGCTCAGCGATATGGGAGGATGAACATTAGCAGAACATAGGCCTACTCAGTGTTTGTGTATTCCTGTTCCTATACCAGCCCAAAGGCTAACTCGAACACTAGCTCTATGATGGGCAACCCTGTCATGTGCTATGTCAGTGACACATACAACCCTTTTAAGTGTCCCTTTCCTTCACTCCTAACAGCATAATTTCATGTCATTGCTGCATTACGGAGACATAGAAGAGCATATAGCATCACCACCTGTGACGGTTACAGGGGCCTCATTCTACCATTAGCACATTACCTGAGAGTCGAAGTTCAAACTGCCAATTTCACTCTGAAGTATCTGGTTTCCATGTTTTAGGTTCACATCAGTCCACTGTCAGAGCCCCCATGGTGGGGTTCGCATGGACatctgtatttatgtatttaagtTAGAATTCCTTGTGCTTATTTCATAGAGCTACAATAGTTAGTTtacttctttcttttttttaccttgtTTTGTAACTTTTTgtaataaaattgattaaatcaaaaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425759 lncRNA upstream 1623 18487036 ~ 18487244 (+) True G374492
TU425758 lncRNA upstream 2254 18486385 ~ 18486613 (+) True G374491
TU425757 lncRNA upstream 4367 18484268 ~ 18484500 (+) True G374490
TU425755 lncRNA upstream 7299 18481331 ~ 18481568 (+) True G374488
TU425726 lncRNA upstream 46389 18442220 ~ 18442478 (+) True G374463
TU425785 lncRNA downstream 39965 18546107 ~ 18546315 (+) True G374517
TU425786 lncRNA downstream 40329 18546471 ~ 18557661 (+) True G374518
TU425791 lncRNA downstream 53803 18559945 ~ 18560162 (+) True G374522
TU425773 lncRNA downstream 57921 18564063 ~ 18565037 (+) True LOC110523370
TU425795 lncRNA downstream 58943 18565085 ~ 18624713 (+) True G374526
XM_021601997.2 mRNA upstream 66609 18415774 ~ 18422258 (+) True LOC110523366
XR_002473438.2 mRNA upstream 78741 18396328 ~ 18410126 (+) False LOC110523365
XM_021601996.2 mRNA upstream 78741 18396331 ~ 18410126 (+) False LOC110523365
XM_036976990.1 mRNA upstream 78741 18396655 ~ 18410126 (+) True LOC110523365
XM_036976988.1 mRNA upstream 311832 18067350 ~ 18177035 (+) False arhgef28a
XM_036976994.1 mRNA downstream 52010 18558152 ~ 18578228 (+) False LOC110523370
XM_036976993.1 mRNA downstream 52039 18558181 ~ 18578228 (+) False LOC110523370
XM_021602005.2 mRNA downstream 52040 18558182 ~ 18578228 (+) False LOC110523370
XM_021602038.2 mRNA downstream 852129 19358271 ~ 19364089 (+) True LOC110523377
XM_021602045.2 mRNA downstream 993462 19499604 ~ 19509065 (+) False LOC110523383
TU425343 other upstream 405502 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 781110 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 1606682 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 1606682 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1750367 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 1477119 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2085338 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2237442 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 2325116 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 2602027 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile