RNA id: XM_021602005.2


Basic Information

Item Value
RNA id XM_021602005.2
length 3689
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110523370
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18558152 ~ 18578228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tGCCTCCTCCGGATGCTCCGCGATTGCGTCACACCATCCATTTAGTGGCTCCGACCACATTTTCAGGTCAGGCCAATATTGGCTCTTGCTGTTATGAGAGTTCGTTCGTAGAGTCAGAAGGGGTAGACTAGTAGCGTATTGAATAATGTTTTTTTTGAAACGGAGGAGTCGGACAGGATTTTTCAGTCAACATTAATATCCTAACCGATGGCGCCTAGGCAGCTGAAAACATGTGCTCAGAATGTCAGTCTGCATGTTGTGAAGGGAACATAGCTCCACTTTGTATTTTTCCCCAATGACGTCTGAAAGCTTAGGAAGGCTATGAATTTCTGCAAACCGAATGGCGTTGTTTGTGTATGAAATTGGATTATGAAACGATGCCCACTTTCTCGCTGACCTGACTCACTGTGGCTCTGGACTGTTTAGATTTTGTCTTTTATTTTCATAAAGGATCTTTGCTCCACATGCAAATCTCGAACGATAAATGCGCACAAAACTGAATGCCATAGGGGTGAACAGGTGACGTCAGTTTAGTATGCTCAGACTGGAGATGCTGGTCCCATGGATGTGTCTCGACGGGAATACGGTTCAGTGATTTGCCGTTCCAGCCCGAGCGCGTTCTACTAACGGAATCGCTTATGATGCCCAGAGGTTTACGGAGGCTCGTGCACCTGGTGCTGTTTTGCCCTATGTCGAAGGGGCTGCAGAGTCGTCTCCCGGCGTTAAAGGTGAAGTACCTGCTGCTGGCCTGGCTGGGGATCCTGGTAGCCAGTTGGGTCCTCTACATGCAGTACGCCTCCTACTCAGAGCTCTGCCGAGGACACGTCTGCCACATGGTCATTtgtgaCCACTACAGGAGAGGCATTATCTCAGGGTCGTCCTGCAAGGCCCTGTGTGAGGAGAGGAGCCTGACCCTGCAGCGATGCATGTCCACCTCTTCCACACACCAAGTGTACAGTGGTCTGTGGAAGGACAGGCCTGTGGTGATAAAGTGTGGTCTAGAAGAGCCTCTGAAGGGGGATGTGGCTCCCGACTCTGTACTGAGACAGGAAATTACCCTGTTTGACAAGCCCACCCGCGGGACCTCCATGGATGAGTTCAGAGAGATGTTGCACAGCTTTCTCAAGTCTAACCTGGGAGAGCAACCTTCTCTCACCACCTTGGTGGGTCGTGTCATCACCCTGGCCGATGTCAACAAGGACCGCAAGGTGTCCCTGGCGGAAGCCAAGTCTGTGTGGGCTCTCCTCCAGATCAACGAGTTCCTTCTGATGGTAGCCCTGCAGGAGAAGGAGCATACCCCCAAACTGCTGGGCTTCTGCGGGGACCTGTACGTGACTGAGCGCGTGGGCCACAGCTCCCTCTATAGGTTGGAGGTCCCCAGCTACCTGCAGGCATTAGTCCCAGAGGCCCTGAGCTCCAGCCTGAACCAGTGGCTGGCCCCGGCGTGGCCCCGGAGGGCCCGCATCACCATCGGCCTGCTGGAGTTCATAGAGGAGGTGTTCCACGGGGCCTACGGCAGCTTCCTGATGTGTGACACCAGCCTGCGCCACGTGGGGTATAATTTCAGGTATGACTGCAAGATGGCAGACCTGCGCAGCGTGGCGTCCGAGATGGCGGTTCGCAGGTTCCTGCGGGGACGTCGCTGCGAGACCAACGCTGACTGCACCTTCGGGCGTGACTGCACTGCCACCTGCGATCGTCTGGTGAAGCAATGTAACACAGAGGTGGTCCAGCCCAACCTAGCCAAGGTGTGTGTGATGCTACAGGACTATCTGGTGTCTGGGGCGCCCCAGGACCTCCGCATAGACCTGGAGAAGCAGCTCCGTACCTGTGTGACGCTCAGCGGCCTGGCTAGCCAGATGGAGGTGCACCACTCGCTGGTCCTCAACAACCTCAAAACCCTGCTGTGGAAGACCATCTCCAACACACAGTACTCCTGAGGACCACAGAATAGCTGCTGGGAGCCATATGTAGGCCGGGGTCGTATTCATTTGACACCAAATAAAGGAAAATGGATTGAAACAAATGGACAATCTGAAGTTGTCCAGTAAGAAATGCAAATGTATTAACTGTTCACATAATTTTCTACGGTATGCCCTAATGACTACAACTCATTTTTCCTTAGACCGACCTTAACCAGGGAAAAAAAAACACCAGGACCTACCCATAGGAGTGAGGCAGGTCCAAACTCTACCCTATTATTTACCCTAGAGGTACTTCCCCTCCTATCCTACTTTTTTACAAACATGCCAAAAGCTTGAGTAAAACAGACTAGTAAATCACTGGCTGAAAGTGAAAATGAATGAAAATCAAATGGATTATGATTTAAAAGTAAAGGCAGTTTATTTTTATGGAAGGATTCTTTATTTTGTGAAGGAGGAAACTGTCTGGTCTATTCTCAGGGCCTTGCCTATGTAATGATAATTAACTGTACAGTATTCTACTTTAAAGAGTAGTTAAGTCTATAACTTCTATCAGGGAACGTCAATGTAGAGGTGTAATGCCATGAAAATATGGGAGTGATGTAACAGTATGTGGACAAACTACTATTTTATCTGTGTGTGAATGGTCCATCAGACAAGGTCAAATGAGATGGAAATATGGAGGGATCAATTGAGCTTTTGTGATAGATCATAACCAATCTATATTACTCAGatgaaacattttttaaaaatacagcACTCCAAACTATGGCAATTTTTCTAGACTAAAACAATTGAAGTCTCAGTATTTTATGAATTATACAACAGGTTGggctaatcctgaatgctgattgggtaaaaccgcattccagccagtgtctgtACCACCATCTAAATTACTATTTACTGTTCCATCTGattgcgcaatccactgtctggCGATATcgcacctcattagctcattgctATGATGCAtccaaataaacaataaacattaTCCAAACAAATGTCacaaaacagcttaaacaaatgcagctattcaggctgcactgtttgacatgactaagttagccgtagttggctagctagcaagcaagggataagaaggtTGCCAGCCagcatggcaatggaacattaaGAATAAACGACTGACACAGAACAAAAAATTGAACGACTGGggcgcgtctctggcaaccgaaacACGGGACTGTCTTGTGGAACGATGAAATAGTATGAACAAAttcatcaaatcaaaatgttaatcattatttgaatatattTGAATATGTTGATAAAAGTGAATATGCACTCAAAGCCGGTGTGGAggatattggcacggtttgccggcCCTAGTCATGGGcctaacacccgtgccaataaatactccaaacaccggcttctctggcattatcacttaagggGAAAAAAGCTGTCTTTTACCATTGTGTAGTTCGCCCCGACAGTATTTCGCAATTCACATTCCAACCAACCATGTTCTCGCCTCAAGTTCCATCCATCTGTCCATGGCACCAATATATTCATTTTACAGGTGCACTTGTAGTCTCCAGTGTCAGTAGATTGCATTGTAATAGTGACATGTTTCGGCATCTGAAGGGAAACGCTCATAAGAAAATATGTTTCAACCAGTGAGATCAGCTTGAGATTTGAATTAGCTTGAAAATTGCATCATGATAAAACCAAAAATCTGGTCCATAAGGCAATTTGATTCTTAAATTGGAACAAAatactgcctagttaaataaaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425786 lncRNA upstream 521 18546471 ~ 18557661 (+) True G374518
TU425785 lncRNA upstream 11867 18546107 ~ 18546315 (+) True G374517
TU425759 lncRNA upstream 70938 18487036 ~ 18487244 (+) True G374492
TU425758 lncRNA upstream 71569 18486385 ~ 18486613 (+) True G374491
TU425757 lncRNA upstream 73682 18484268 ~ 18484500 (+) True G374490
TU425771 lncRNA downstream 457 18578685 ~ 18581458 (+) True G374504
TU425807 lncRNA downstream 11421 18589649 ~ 18590768 (+) True G374536
TU425853 lncRNA downstream 64364 18642592 ~ 18737468 (+) True G374582
TU426209 lncRNA downstream 171390 18749618 ~ 18749824 (+) True G374907
TU426210 lncRNA downstream 171796 18750024 ~ 18750238 (+) True G374908
XM_021602001.2 mRNA upstream 52040 18487620 ~ 18506142 (+) False egfl7
XM_021602038.2 mRNA downstream 780043 19358271 ~ 19364089 (+) True LOC110523377
XM_021602045.2 mRNA downstream 921376 19499604 ~ 19509065 (+) False LOC110523383
XM_036977015.1 mRNA downstream 1473165 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 1473170 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 1473170 20051398 ~ 20264903 (+) False LOC110523391
TU425343 other upstream 474817 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 850425 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 1675997 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 1675997 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1819682 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 1405033 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2013252 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2165356 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 2253030 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 2529941 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile