RNA id: TU427179


Basic Information

Item Value
RNA id TU427179
length 2172
lncRNA type read_through
GC content 0.42
exon number 2
gene id LOC110523383
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19499604 ~ 19512291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGAGTGCTCCCTGCTACAGGACCAACAGACACCAGGGGGGAAGGGGATGCAAAATGATTCCAAAAAGGGCACTTTAGGCCCCAGTATATCAATGAGGACAGATGGGACAGTTGATCCTTCACCTCTGAACAGGGTGCCATCGGTCAGAAAAGACAAGACTCTACATGTGACGTTTACAGACGAGACACTGAACTTACAGGAGAAATGCATCTGACGGACACAAACACAAACTCCACAAGAGTGGCGGATAACACAGAAAAGTCACAGTGGGGAAAAAGGACATCTAATAGCCTTAAAGGTTGGGACTTCTGAAGGGTTAAACTCATAAGGAAAATGTTTCCCTGTGTCATGTTTGTACTCTTATAACAACAACTACATGAAGCAAATAAGACTGGGAGTTGGTTTAGTTCATCAGTGATGCTCCTAGCTGAAGCATGAGGTCCTGTTTAGGGTTCGGTCAAAATGTCACATGGTGCCAATGTGGATTGTATGAGATTGGATCTATTTACATAGATCATATATTGGATCTATTATATATGTCACATTCTTATTACAAGAATACCAATATAAACATATACCAGCACACACATCAGTAATGAACATAAAATGTAATTTCACCTTTATAAAGACAAGGAGATTTCATTGCACTTTTCAAAAACTCAAACCCACTGAAAGGCACTAAATGCTACCATGCTATCATAGTGCTATCTGAGATCCTTGGGACTTCCACACCCCCTAAACCCTAACTAAACCAGAACATTTACCTAATCATGACCGTAACATTTTAAACTACAAAGGGGTAGGGACATCCCAACAATCCCAGATAGCGAGGACCACTACTTACCACTGGCCTCCACCAATACAATTGTTGTGATACACTGTATAATCCTGAGGCTACAATGTGAATTGTGTCCCATAACATCAAATTATTTCAGAAAGAAAAAATATGTTTCTTCTCTGTGAGAAGGTCTAGCTAGTTTGTATCCATGTCAAATTGCTACAAAATGGATTGAAATTGTATGTTATATTTCAACATTTGCAAACAATTGTATCATATTGGTTGACTTGGCAGTTTCAAAACAATGCCTGAAGTATAAAAATACAGCAAAACTATTGAGCATATAATCCCATACAAAAGACTAAGgagtcaaaacaacaaaaacaaacaaaacacccATTTCAGTCCATAAGATCCATTCTAGCCCATAAGTCCTTAGAGACAGATCATAGTCCCCGTGCTTTGACCAACTGATCCTGTGATGAAGAGGGTATGTCCCCTGACCCCGCCTCCTCCACAGGTATCTCCCTAGAATTCCCCTCAGCGTCGACAACCACGACTGTCCTCTTCAGTTCCTCATAGCGTCTCTGTCTCTCGGCTACGGCAGCGCAGGCCACCACCACCTCGTCTGACTCAAAGTCGTAGTCCTGCTGGAGCTCTGGAGGGTTCAGGACATCCCGTTGGGCCTCCTCCTCCcgctgggtctggttctgggccGTCCGTCTCTGCTGCAGCAGCTGCCGCGCCCACGCCAGGTCATCCGACCAGAGGGGGCGCTCTGACGGACACAGGTGGACCGCTACCTGGAAGGACCTCACCGCCTGTTGACAGGAGGAAGACCTTTGTGCTATTTTCCTTTCTGTTAACATCTTTTTATTGATTTAAGATTAACACAAATGACTGGTAATGAAGGACAATAATTGTTGTGGAGAAGATGAAGTATAAAAATCCAGCAAGACTATTGAGCATATAATTCCATGCATTTGACTCTGTTACTTGTACTGAGCTTGTACAgataggatcttcatttgacctGTATTGTCgcagaaaaataatcctgcagcaacaggatttggacgtttagtccataatgttgcctAATCAATGGTTAGGCTATTAGTTGGTCAAAACGAGGCTACATAAAAAGTGGAATATTATTAATATAACCATGTGTTAGTGTGCGTGTTCAGTGAATTGATGTAAATCACAAAGATTCTATGCATTTCCTGCGGcgcaaaagagtgatcaaattaagatcctacagctTGTATGGTTGAAATAACAAAGGGGATTTACATTGCTGTTGTCTTTTGTTCAAATTACACTTTATAGGTGCATGGCATTACTTTCCCCCAATTAAATGATATCAGTGAACTGAAATGTGCTTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427171 lncRNA upstream 9327 19497070 ~ 19497290 (+) True G375730
TU427164 lncRNA upstream 15129 19491282 ~ 19491488 (+) True G375723
TU427149 lncRNA upstream 23100 19483237 ~ 19483517 (+) True G375708
TU427137 lncRNA upstream 30211 19476021 ~ 19476406 (+) True G375696
TU427069 lncRNA upstream 83849 19422128 ~ 19422768 (+) True G375629
TU427337 lncRNA downstream 112096 19621070 ~ 19622087 (+) False G375871
TU427338 lncRNA downstream 112178 19621152 ~ 19622673 (+) True G375871
TU427453 lncRNA downstream 296755 19805729 ~ 19812504 (+) True G375980
TU427732 lncRNA downstream 408877 19917851 ~ 19918156 (+) True G376250
TU427749 lncRNA downstream 417647 19926621 ~ 19926821 (+) True G376267
XM_021602038.2 mRNA upstream 142528 19358271 ~ 19364089 (+) True LOC110523377
XM_036976994.1 mRNA upstream 928389 18558152 ~ 18578228 (+) False LOC110523370
XM_036976993.1 mRNA upstream 928389 18558181 ~ 18578228 (+) False LOC110523370
XM_021602005.2 mRNA upstream 928389 18558182 ~ 18578228 (+) False LOC110523370
XM_021602000.2 mRNA upstream 1000475 18488867 ~ 18506142 (+) True egfl7
XM_036977015.1 mRNA downstream 542419 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 542424 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 542424 20051398 ~ 20264903 (+) False LOC110523391
XM_036977014.1 mRNA downstream 542425 20051399 ~ 20264903 (+) True LOC110523391
XM_021602055.2 mRNA downstream 881556 20390530 ~ 20414156 (+) True LOC110523393
TU425343 other upstream 1423252 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 1798860 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 2624432 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 2624432 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 2768117 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 474287 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 1082506 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 1234610 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 1322284 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 1599195 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile