RNA id: XM_036977013.1


Basic Information

Item Value
RNA id XM_036977013.1
length 5765
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110523391
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20051393 ~ 20381619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGGCAGCGACAGAGGCACAGCACCAGCCAGATGCGCGCGGAGGGCACAGCAGAACAGTCGAGCAGAACGAGAGCATGGTGGAACGCGCTTCGCGCACGGAGGGGAACGCGCTGATTGACAGCTTCGGAGGCACGGAGCGCCCCACGCCGCACACGAACCGAGCCCGCTAATCTGCCTGAACCGCTCTTGGCAAAAGCATCTGTGCGAAATAACCATCCTCATGCATATCAGCTACTAAATTGCCGCTGACCGGAGCCTTGCAGTCATCACTCAATTGTGGGAAGAAATCAACCCCACCACATAGCAATGTAGCAGGCGATAGGCTATTGCACTGTACCTTGGCTTAATCCTTTTCACTCAAAACGGGGCAGTCTGGAAGTAACTAACTATTTGTTTTTTTGCTTCTTCAATACTGAGGATAACACATTCTTGGCACTTGCTGAACGATTGGCGGCTTTGGTCTAAAGGTTCTCCGGAGAATGGTAAATGACCGACGGGGAATCATGAACAGCACTTCGGAACTCGAAGATGGACCACGGCATAAAAACCAGACGTTCTGTGAGTGTGTACCCAGCACCTCCCAGCTTAAACACCGCTGGTCAGACTCAGACACAGTCAGAGAGACCCCATCACCCACCAAGagGATGAGCTGCAGCTACCTCCTGTGCACCATCCTCCTCTTCGTCGCCGTCCTTCTGGCTGTCACGGCAACCGGCACCATCCTCTTCATGAACCACTACCAGGCCCCGCCCATGTCTGACGGCCCACCCCACATCTCAACCAATCCGGACGAGGCCAAcgccctggtaaccgtggagaggGGCGACGGCTCACGCATCAACATCTTCATCGACCCCAACTGTCCGGACTACAACGGGAACTTCCTACGCCTGGAAGGGGTGCAGACATCGCTGCTCCACTCGCTGACCGACCACGACACCGACCTGAAGTCCGTGAAAGGTCAAGACCGGGCGCTGCTGGTCAACCTAGCTGAGGAGGTGGCCAAACTGTCGGCCCACGCTGGTCAGCTGAAGATGGACTACGAGTCTCTGAGACGAGGTCAGGGGAGTCTGGGGCAGGATCTGAACACACTGCAGACAGAACAGGGACGCCTCATACAACTACTGTCTGAGAGCCAAATCAACATGGTGAAGGTGGTGAACACTGTGAGCGATGCTCTCAGCTCCATGCAGAAGGAGACAGGGGGACTGAAGGCTCGGGTCAAGGCTGACCTACAGAGAGCACCGGTCAGAGGGGCTCGTCTCAAAGGCTGTGCCAATGgcTCTCGTCCTCGTGACTGTGGTGATCTGTATGCTAATGGTCAGAGGGAGGATGGCATCTACTCTGTGTTTCCCACTCACTACCCCTACGGCTTCCAGGTCTACTGTGACATGACCACGGACGGAGGGGGCTGGACTGTGATCCAGCGCAGGGAAGATGGCTCGGTCAACTTCTTCAGAGGATGGGACTCCTACCGTGAGGGATTTGGCAAGATCACTGGAGAACACTGGctagggttgAAGCAGATTCATGCCTTGTCCATCCAGGGTAACTATGAATTGAGGATTGACCTGGAGGACTTTGACAACAGTACAGCCTACGCCCAGTACGAGACCTTTGGAGTGGGCCTGTTCTCTGTGGACCCGGATGATGATGGATACCCACTGACAGTTGGAGATTACTCCGGAAATGCAGGCGATGCTCTGCTCAAGCACAACGGGATGAAGTTCACAACCAAAGACAAGGACAACGACCACTCGGAGAACAACTGTGCCTCCTTCTACCACGGCGCGTGGTGGTACCGTAACTGCCACACGTCCAACCTGAACGGACAGTACCTCCGCGGGCAGCACACCTCCTATGCCGACGGCATCGAGTGGTCCACCTGGACCGGCTGGCAGTACTCCCTCAAGTTCTCTGAGATGAAGATACGACCCGCGCGCGACGAGAGCAAATGAGTATATGAGGCAATAACAGAGGAAAGGAGTTGAAAGTGTTCAGAGTAATAAAACCACACCCTCAGATACTGTTTACTGAATGACTAAAAGGATTGACATCTTTGATTGGTTTACTACTATTCTCTACTGTTTCCTGTGGAGCCCTTGtccctctccaccacctcccaGCCCCGCCCAACTTCATGTGCCCCATCCCTACCCGTAGTCCCCTATCACCTACTAGTGTTGTGCTGAGGCTTTttgtgccccccctccccccacacacttcCTTCCCAACAACCTCATGACTTCACTGGATCAGGAAATGAGTCTGATTCACTCTGTTCATCACTCTTTCTATTAGTGCTTCATTTATATCTAGCTATTAATCAAGTATCTGTCTATTCCTTCTGAGCCTTGACCTTGTCCTTGACCTGTCTCCTGTGTTTGTTGTGCCCTGTAACCAGTAGTCCTATTCCCATAGTCCTTTGCTGCGTTGCTGCCAGTCAGCGAAGCGTGGCGTTACCGTGTGACCTTAGAACAAGTGACTGATTCATGATATGTCAGAAACGGAGATGTGACATTACagttggaacacacacacacacacacacacacacacacacacacacacacacacacacacaaacttacacacgcagacacacacacacacacacacacacacacacacacacacacacacaaacttacacacgcacacacacacacatacacacacgcatacatacacgcatacactcacacacacatgcatacacacacgcatacacacacttacacacacacaccctgcccccTGAAGCTACCATATGACCACAGCAAAACTCTGTCACCTAAAGTGACCCGGCTGCATTGGCCTCCCAGCCAGAATGTCCCAACCCACAGTACTGCTTACGTGTCCCTTTATTTCAGATAGCCTCGGTAGGAGGCACAACGCAATGGAACAGCTGCACCAGTGTAGAGAGGGAATGGTTGAAATAAAAGGAGACAGAAGattgaaagagggggagagagagagagggggcgagaaagggagagagagagaggacaggtcaaAAAGAGGGGTAGAAGGGAATGACTTAATGAAAAGGAGAAATGGGAATATACAGAGAAAAAGAAAGATGAAGGAGAGGTTATGGAGCGCTGAGGAAGAAGGGATGAGTAAACAAGAGGGAACCGATCTCAATCATCTGACTGAGGCTATTAGGGTGCATATTGGGCACTTAGTCTGATCACCAACCAAGTTACTACTTCTACAGTACCCCAGATGGTAAGTGTGCAAGTGTGCTTGTCCTCTAATCACTCTCCCAGTCACCCTAAGAGTCAATTTCAGTGATCCATTTGAgctcccagtcagtcagacaaacAGCCTATGTAAAAATTATATGATGAAGGTTATCAAGTTCCCATTGGTAGTGGGTGAATGTAGGAGGCAGCAGAATGGAAAAGAGGAAAATACAGGGAAAAGAATGGGGTGAAGTGACAAGGTGCCACTGGTGGCCTACCATAGAAAGAACGAGAGGAAGAAAGGTTATTTGACTGCTAACTTCCAGAGCCAAGAGTGTCATGACAGAGAGGGTAGTCTGTTATTCATCTGTTCCTTTAGGGAGTAGAGCATGTTTTAACCTTTGCCACCACGACCACAAGGTTAAATAGTCCCCTACATCCCTGAGCATTTAAATTCTATTCCTGTGCTTTCACAATCAGCTGTATAGTCCATAGAAGCTGCttcacacatggacacacacacacatacaaacacactgacacacaaacacacactgacacacacacactctgataaCAGTCCTTTAACGTAGTTACATACACATTCTGTTTTCATCTCATCCTTTATGTTCAATTTCATCCATATCTCTTTTTTTTATCCACctcacctctcatctcctctccctctcctccactcccctctctactccatctcccctctctcctcctctccatctcccctctctcctcctctcccccctctccttctctactactctccctctctcctcctcttcccctctccccatttCCTTATCTCCTGTAATATTTTATGTTCTGTAATCTAACCATGTCTAGCTGGATGTCTAGGTTTTCTGCTAGGGTGACCCAGGATCTTTTCTTCTGGCTCTAGCAGAGGAACTGTTGCTGTAAAATACAGTTTGCCGCTATCAACCATGATTTTCTTTCTGAATAGGAGCTCAAAAACTTGTCGGGAATggtgacaacaaaaaaatatgttttgtctGTAAAGTATTATAGAAAAGAAAAAAAAGCACAACATCAGAAGTTTTGCTAGCAATGAAATTGTGGAATtctgaatatttttttttccaTTTGTGGTTTTCATTCTGGATTTTCTTTAGATGTACTGAAAGCTTTAAAGATATGTGTAGATTTATTGTACAGTGTGTATGACCTTTAGAGCATGTCCAACTGTTTTCATACTATGCCAAAAGACAAAAGAGAACTCAAGCACACAGACTTTACAAATTACAagtcaaaagaagaaaaaaaatacaaaaccagAGCCCTTATTTCTCCTCTTTTACCGGACTGGGCACAAGAGAAGGCGTGGCCAGCTATAGTTTTGGGGGAGGGGCatgtgagaaagaggaggagttTAGTAAGCACATGAGGGCATGCCCACTATAAAAAAAACAGCACAAATTAATCTAAACTGAAGCGATGTCAATGGCACATCTGGGGGACAATGTGGCTCTGATTGGCCTGTTGGACATTATGGGGACGTCTTTGATCTGGTCAGATATTTTGGCTCTACTTGATATACTGGCTCTATGGGACACACCAACTCTGGAGGACATTTTGATCTGCCCTTGCTGCCAGTGGGCCAACATGCATAGTGATGAGCATTTCTCCTCAGACACTGGATTGGCTATGTGTTTTATCCTGGCTCTTTTTCCAGGACAGGACAAAGTGTGTGTCTGGACTGCAGCACCCACAGAGCTCCAGCTCCATGCAGCCAACTATCCACAGAAACCTGCTCAGTCTCAGTCAGTCATAGAGGCTGAGTCAGTGAGTCTCAGTTCACCAGGAGTCCTGCGTTGGTAACACAGAGCAGAGTCAGAGTTCATCCACTTCTACGGTCAGCTAGTCTGCCTCTTCTACCACTACTCAGCTACTGAAGCCAAACATCAAAAGAACCAACCGTCTAATCATATTATCAATGCATTATTAACACTAATCACGTTACCATGGAAACAGCATTACATGGGAGAGTTTGATGACAACAATTTGTGTTGGAGTAGAAGATAAGAGATGATGATTTCATAGGGTATCACAGAAGAGATGATTTCAAAGGGTGTTGTGCAAGTTAAAATGGATAAACGTATAAAGTTTAATGAGATACTGGAATGAgtcagactgatgtcttgatgtgactgactgaccaggaGGACATTCatttctctttctgtgtgtctgtgtgtgagagtgtgtaggtttgtgtgtatgtgtgcgatgtgtgtgtgcgtgtctgtgtgagagagagaaaggaacggTAGGAATTCATCAAAGTAAATGTGATGCTTATGTACAACTTGCCTCCCTGCTATTTGTGTTGATAACAGAGAGATATAAATGAACCATTAAGTCATGTGATAACTGATTCCATAGTGGCTCGCGCCCTTCTGGTTATGTGTTGAACTGGACTTCTCATTTGATCCCCGACTCCCCTTCTAATGTAAAACCTTCAGCGTCAAATAGTGCACGTTATACGTTTTATCAACGTACTGTACACCCCACGCCAACCCCCACTCTCTGAGTAGTTTAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427819 lncRNA upstream 52802 19998340 ~ 19998596 (+) True G376330
TU427815 lncRNA upstream 58289 19992677 ~ 19993109 (+) True G376326
TU427810 lncRNA upstream 60338 19990201 ~ 19991060 (+) True G376323
TU427806 lncRNA upstream 61639 19987512 ~ 19989759 (+) False G376323
TU427999 lncRNA downstream 1983 20266886 ~ 20267159 (+) True G376499
TU428004 lncRNA downstream 7755 20272658 ~ 20297610 (+) True G376503
TU428038 lncRNA downstream 45913 20310816 ~ 20335580 (+) True G376536
TU428370 lncRNA downstream 119123 20384026 ~ 20384324 (+) True G376857
TU428374 lncRNA downstream 122377 20387280 ~ 20387705 (+) True G376859
XM_021602045.2 mRNA upstream 542333 19499604 ~ 19509065 (+) False LOC110523383
XM_021602038.2 mRNA upstream 687309 19358271 ~ 19364089 (+) True LOC110523377
XM_036976994.1 mRNA upstream 1473170 18558152 ~ 18578228 (+) False LOC110523370
XM_021602055.2 mRNA downstream 125627 20390530 ~ 20414156 (+) True LOC110523393
XM_036977016.1 mRNA downstream 243171 20508074 ~ 20759255 (+) False LOC110522816
XM_036977017.1 mRNA downstream 243171 20508074 ~ 20759255 (+) False LOC110522816
XM_036977020.1 mRNA downstream 243171 20508074 ~ 20759255 (+) False LOC110522816
XM_036977018.1 mRNA downstream 271233 20536136 ~ 20759255 (+) False LOC110522816
TU427802 other upstream 67550 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 1968033 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2343641 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3169213 16870434 ~ 16882185 (+) False G372618
TU428545 other downstream 326577 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 478681 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 566355 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 843266 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1907632 22172535 ~ 22231920 (+) False G378660

Expression Profile