RNA id: XM_036977021.1



Basic Information


Item Value
RNA id XM_036977021.1
length 4233
RNA type mRNA
GC content 0.55
exon number 14
gene id LOC110522816
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20508074 ~ 20759255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCTTTTTAAACGGGATGTGgagtgagggagcgagagaggggagtgtTTGACAAGGCACAGCAGACTGCTCTCTCGGGACGTATGGGACTGGAGCAGCCTATACTGGGAGTAGCGGCGTATCACAAATGGCAGGCTGCGGCCACACAAAATAGTCTGAAAACAAGCAGCGATTAGCGCGCAGAGAGGAATGCGACCCAAATTGAAGTGGTGTGTCATTGGGAACCCGCGCGAGGTTCCATGGAGCAATGTTTCACCTATTTAGTAAATCTTCTAATCTGATGCCGAGGCTGAAGGAGTCTCGCAGCCACGAGTCGTTGCTCAGCCCCAGTAGTGCTGTGGAGGCCGTGGACCTCAGCATGGAGGACGAGGTGCTCATCAAACCTGTTCACAGCTCCATCCTCGGACAGGACTACTGCTTCCAGGTCACCACCTCAACAGGAAGTAAATGTTTCTCCTGTCGATCTTCATCAGAGAGGGACAAGTGGATGGAGAACCTGAGGAGAGCCGTCCACCCCAACAAGGACAACAGCCGTCGGGTGGAGAACATGCTGAAGCTGTGGATCATCGAAGCCAAGGACATTCCTGCCAAGAAGAAGTACTTCTGCGAGCTGTGTCTGGACGACACCCTGTACGCCCGCACCACCTGCAAGCTCAAGACCGACAACGTCTTCTGGGGCGAGCACTTTGAGTTCAACAACCTCCCGGCTGCCAAGAGCATCacggtccacctctacaaggacTCGGACaagaaaaagaaaaaagacaagaacAATTACATCGGATTGGTCAACATCCCAGTCGCCGCGGTGACGGGAAGGCAGTTCATGGAGAAGTGGTACCCGGTAAGCACTCCGACGCCCAACAAGGGGAAGACGCCAGGGCCCATGATTCGGATCAAGGCCCGCTACCAGAGCATGAACATCCTGCCTATGGAGATGTATAAGGAGTTTGCAGAGTACACCACCAATAACTACATGTTGCTGTGCTCCGTGCTGGAGCCTGGCATCAGTGTGAAGAACAAGGAGGAGATGGCTTCTGCACTGGTCCATATTCTACAGAGCACCGGCAAGGCCAAGGACTTCCTGACAGACCTGATGATGTCAGAGGTGGACCGGTGTGGGGAGAACGAGCACCTGATCTTCCGAGAGAACACGCTGGCCACCAAGGCTATAGAGGAGTACCTCAAACTTGTGGGGCAGAAGTACCTACAGGATGCACTCGGTGAGTTTATCAAGGCGTTGTATGAGTCAGATGAGAACTGTGAGGTGGACCCGTCCAAGTGTTCGTCCAATGACCTGCAGGAGCACCAGAGCAACCTGAAGATGTGCTGTGAGCTGGCCTTCTGCAAGATCATCAACTCCTACTGTGTGTTTCCACGGGAACTCAAGGAGGTGTTTGCATCGTGGCGACAGGAGTGCAGTAGCCGGGGGCGACCGGACATCAGCGAGCGTCTGATCAGTGCGTCTCTGTTCCTGCGTTTCCTGTGTCCGGCCGTTATGTCCCCGTCGCTTTTCAACCTGATGCAGGAATACCCTGATGACCGCaccgcacgcacactcacactcatCGCCAAGGTCACGCAGAACCTGGCCAACTTCgccaagtTTGGCAGTAAGGAGGAGTACATGTCCTTTATGAACCAGTTCCTGGAACATGAGTGGACCAACATGCAGCGCTTCCTGCTGGAGATCTCTAACCCAGAGACCATCTCTAACACTGCAGGGTTCGAAGGTTACATAGACCTGGGACGGGAGCTGTCCACCCTGCACAACCTGCTGTCAGAGGTCGTCTCTACCATGGACCAGAGCTCCGCCTCCAAGCTAGGCCCCCTACCCAGGATCCTCCGGGATGTGAACACAGCGCTGAACAACCCGTCCAGCATGACCATGAGCATGACCGCTCCGTCCTCCTCTGACCGTATGGGGTCACCGCCCAATGTAGGGGCAGAATGCAGCATCTCCACCGGCCTACAGAAGATGGTCATCGACAATGACCTTTCAGGgttggtGGACTTCACCCGGTTACCCTCCCCCACCCCGGAGAACAAGGAACTTTTCTTTGTCACCAGGAACGCTGGGATCCAGCCCACCCCGGCCCGCAGCTCTAGCTACTCTGAATCCAATGAGCCCGACCTGGGCATAGCCAACGGCAGCAAGAGCCTGTCCATGGTGGACCTCCAGGACCCCCGCAGCTTAGAGAGTGGCCCAGGCCCTGGCCCGTCAGACGGCCTGGGAGAGGGCATCGTTCCTGGGGGAGTGTGGTCGGCCCGAACCCCCCAGGGGAACATCACTGGAGGTCCTACTCTGAGAAGGCCCGTCCAGACCCCCACCACCCCCGGATCGGAGAGCGCCCCTGGCAGACCTGCTCAGCTTCTAGCCCCCCTGTCCTTCCAGAACCCCGTCTACCAGATGGCGGCAGGGCTGCCCTTGTCGCCGCGGGGCCTGGTCGACTCGGGTTCTGAGGGCCACAGCTCCCACAGTTCCCATAGCAACAATGAGGATgggccaggaggaggaggggggatacaCAACTCCTTCCTGAACCACGGAGTAGGAGGTGGGGGGAGCAGCGTGGAGGAGTATGCCCGTCGTTCGGGGGAGTTCATAGGCACGCGGAGGCAGCTGTCACTCACAGAGGCCCAGCACCAGCCCACCGTGCCCAGACAGAATAGCGCCGGCCCCCAGCGCAGGATAGACCAGCCCCCTCCACAGACCACCGTCACCAGGGGCCGCACGCCCCCAAACCTGCTCAACAGCGGGCCCTACCCGCGCCCCTCCAGCAGCAGCATGATGTCATCCCCCGACTGGCCCGGCAACGGGGCGCGGCTACGGCAACAGTCGTCGTCGTCAAAAGGAGACAGCCCAGAGAGCAAGCAGAGAGCCCAGCACAAACAGGCCCCCTCCCCAGTGAAGCCCAATGCACTGGACCGTACGGCTGCCTGGCTGTTGAATATGAATGTTCAGTATGTAGACCATGAGGGGATGGACCCCGAGTTCAGAAACAGAGAGGATCTCACTCAGGCCGAGAAGtaccAGCAGGAGATTGTGGTCCTCCAGGAGAAGCTGCGTGTGTCGGTCCAGAAGCTGGAGGAGTACGAGGCTCGTCTGAAGGGTCAGGACGACGGTGCTCAAAAGGTGCTGATGGAGTACCAGGCACGGCTGGAGGAGTCTGAGGAACGCCTGAGACGACAGCAGGATGACAAGGACCTCCAGATGAAGGGTATTATAAGCAGgttaaTGTCAGTGGAAGAGGAGCTAAAGAAAGATCACAATGACATGCAGGCTGTGGTTGACTCCAAACAGAAGATCATTGATGCACAGgaGAAACGTATAGCGTCCCTGGACACGGCCAACGCCCGTCTGATGAGTGCCCTGACCCAGCTGAAGGAGCGCTACAGCATGCAGACCCGTAACGGCATCTCCCCAACCAACCCCACCAAGCTCCAGATCACTGAGAATGGAGAGTTCAGGAACAGCAGCAACtgctagaggcagagagagagggtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgttggctggtGCTTGTAGAGGACACTTCCTTATATGGACACTACATGGTGAGGAGAATGTGAGTGGGGAGACCACTGCCAGGGGCCAAGCGAGGAGGCGGGTCTTCAGTTTGACAGACAGCAGACCAGGAAAGAGACAACGAATCAATGGACAGAGCTGAACACCAGATGGGCCCTGCAGAGGAGAAGCCGGGACAAGCTGTAGACATGAACTGAACTCTCCGTCAATCAATCGACTTGGATGTTTCCATTGGATGTATGCAGTTGCTGGGACAATTTCAGGCTCTCTTCCCTAAAGCTTGGGTCAAACCACTATATAATCAACACATTGTCTGTCAGATAGTCACCCAAAACCTCtttactctcctcttctcttcttctctgttctcctttcctctcctcttttctcttctctgttTTACTCTCCTTTCCtgacctcctctcttcttctctctgttagGAGCAGGTTACGTGGACCTTGtacaaaacaataacaaaacaatgATTTATTTAGATCTTATCTCATTCTTTTAAAAACCAAATAGGAGCTTTGAAATATTTTTTGTCCAAACTGATCTTtatttttacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU428603 lncRNA upstream 3759 20667047 ~ 20667366 (+) True G377078
TU428596 lncRNA upstream 9567 20661352 ~ 20661558 (+) True G377071
TU428589 lncRNA upstream 19054 20651832 ~ 20652071 (+) True G377065
TU428587 lncRNA upstream 21796 20649037 ~ 20649329 (+) True G377063
TU428586 lncRNA upstream 22936 20647908 ~ 20648189 (+) True G377062
TU428651 lncRNA downstream 491 20759746 ~ 20760016 (+) False G377125
TU428652 lncRNA downstream 491 20759746 ~ 20760485 (+) True G377125
TU428675 lncRNA downstream 40806 20800061 ~ 20846940 (+) False G377143
TU428677 lncRNA downstream 86047 20845302 ~ 20846940 (+) True G377143
TU428678 lncRNA downstream 90399 20849654 ~ 20851140 (+) True G377144
XM_021602055.2 mRNA upstream 256969 20390530 ~ 20414156 (+) True LOC110523393
XM_036977015.1 mRNA upstream 289506 20051393 ~ 20381619 (+) False LOC110523391
XM_036977023.1 mRNA downstream 71856 20831111 ~ 20842676 (+) False LOC110522817
XM_021601313.2 mRNA downstream 99087 20858342 ~ 20859762 (+) True pnx
XM_036977024.1 mRNA downstream 122683 20881938 ~ 20897867 (+) True LOC110522818
XM_021602058.2 mRNA downstream 138866 20898121 ~ 20910637 (+) True LOC110523395
XM_021602060.2 mRNA downstream 163759 20923014 ~ 20944043 (+) False ccar2
TU428545 other upstream 74262 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 687277 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2587760 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2963368 17704113 ~ 17707757 (+) True G373726
TU423601 other upstream 3788940 16870434 ~ 16882185 (+) True G372618
TU428679 other downstream 72003 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 348914 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1413280 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1413280 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1744497 22503752 ~ 22506270 (+) True G378832

Expression Profile