RNA id: XM_036977023.1


Basic Information

Item Value
RNA id XM_036977023.1
length 2340
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC110522817
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20831111 ~ 20842676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAGACAAATATGTTGCCAATAACATTCAGTTTCTAACACTCCCTCTCGACAGATTAGTGACGCAAACTTTATCGCACTTTTTAAAAGAATAGGCTACATCGTTTTTACATGTTCAGTATTTTGTTTACTAACACTTTCATTTATATATGGAATCTATCTTGGCTTGAGAAAGAGAACCAGACTGACTGTACATCTTCTGGGGGATGGTTAAACCTGTCTTTGAAGACGGATTTTTTGAATaaggaaaaggagagaaaaaCGAAAGTTGTTCCAGTtgtgatttgttgttgttgtatggtCCACATCCCTCTGCAGCAATGGAGATAGATAGTATGGTGGCGAACAGCGCACTCATCAGAGCCAGAGGAGGTGGAGGGGGAAAAGGCAGGAGTTGGAAATGGAAAGACATGCTGCGCTTCCCTCACATCAGCCAGTGTATGGAGCTGGCAAAAACCCtcgagcgaGACTACTACAGTCTGTGTGTGAAGCAGCCTATCGGCAGACAACTATTCCGTCTCTTCTGTCAGAGCAAACCTGAGCTGCGGCACTGCAACTCCCTATTGGACAAAATGGGGGAGTATGAGGTGAAGTCAGATGAGGAGAAGATGAGTTTTGGCATGCAAATCATTAACAGGTTCCTCAGTAGACAGTCATCTGAGTGTGTACAGGTAGTAGAGCGCTATGGTGAGAAGTGTAGGGAGAGTCTGGAGGAGCAGCACAGTAGAGAAGTCTTCATTGACTgcacagaTGACCTCCATGAGTACCTGAGCGGTGCCCCCTTCCTTCAGTACCAGCAGAGCATGTACTTTGACCGTTTCCTGCAGTGGAAGATGGTAGAGAGACAGCCTGTTACCAAACACATCTTCAGACAGTACAGGTTGCTTGGCAAGGGAGGCTTCGGGGAGgTGTGGGCATTCCAGGCACGTGCCTCTGGGAAGATGTATGCGTGTAAGAAGCTGGAGAAGACTCACGTGaagaaggggaaaggagaggccATGGCCCTCAATGAGAAACAGATACTAGAGACACTTAACAGCAGATTTGTGgtcaGTCTGGCGTACGCGTATGAAACCaaacagtctctctgtctggtgcTGACCATAATGAACGGAGGAGACCTGCGGTTCCACATCTATAACATGGGTACTTCAGGCCTGGAGCAGGACAGGGTTCAGTTCTATGCTGctgaggtctgctgtggtctccaccacctccaccagatGAACAttgtctacagGGATCTAAAACCAGAGAACATCCTTCTGGATGACAACGGGCACATCCGTATCTCAGACCTGGGCCTGGCGGTGACACTATCTGAGGGGAATCTGGTACGAGGCAGGGTGGGCACCCTGGGATACATGGCTCCAGAGGTGATTGGCAACGACTACTACGGGTTGAGCCCTGATTGGTGGGGCCTGGGCTGCCTTGTGTACGAAATGACGGCAGGACGATCCCCATTCAAGAGAAAGGGGGAGCGATTGATaggaaaggagatggagagaaggatacaggaggaggaggaggagtacggAAAGATATTTAGCAACGAGACGAAAGACTTCTGTCGCTTGCTGTTGACTAAAGACCCAAGACATAGGCTGGGGTGTCAGGGGAGTGGGGTGTATGGGATTAAGTCCCATCCCTTCTTCAGAAACATCAACTTCAGGAGGTTGGAGGCCGGAGTCATTGAGCCACCCTTCAAACCGGATCCCAGAGCAGTGTACTGCCAGGATGTTCAGGACATTGATGAGTTctccacagtaaaaggagtcaTTTTGGAGAGGGCAGACAACGACTTCTACATCAAGTTTAACACAGGCTCCGTGGCCATACCCTGGCAGACAGAGATGATAGAGATGGGTTGTTTCAAGGAGCTGAATGTGTTCGGGCCTCAGGGTTCCAGACCCCCTGACCTGGACTGGACCCAGACCCCTGCCCCACTGAGCCCCAAACGCAGCCTGCTGGACCGCTTATTCCGCAGACATCATTCAGAGGAGTCAGGCAGCAGAAGACACAAGTCAGACAGCAGCACCATGGACTCAGCTAGCCTGCTCAGCACTACAATCTAGTGGTGGAGGCACAGCACTACAGCCAATGGACTAAAGCCAAAGCTGCAACAGACGTTAGAGTGCCTGGGCCATTCCATCTATCGTTCACCAGCTCAGGCCAAAGAGACCACCCCCGTACTATCATCCAGGAGGTGGTCATCTTATTTCTGCATGAGTCAGATCAGAGAGAACCTCAGCTAAGATTGTTCTGATTTTGTACCCGTGTGTTTACGTAACCTTAGTATAAAAACCTTTAAAACAAATCTTTCCAAATCTTTACTTTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428652 lncRNA upstream 70626 20759746 ~ 20760485 (+) True G377125
TU428651 lncRNA upstream 71095 20759746 ~ 20760016 (+) False G377125
TU428633 lncRNA upstream 88468 20709523 ~ 20742643 (+) True G377107
TU428632 lncRNA upstream 121966 20708923 ~ 20709145 (+) True G377106
TU428631 lncRNA upstream 125214 20705691 ~ 20705897 (+) True G377105
TU428677 lncRNA downstream 2626 20845302 ~ 20846940 (+) True G377143
TU428678 lncRNA downstream 6978 20849654 ~ 20851140 (+) True G377144
TU428729 lncRNA downstream 71476 20914152 ~ 20914533 (+) True G377186
TU428738 lncRNA downstream 74511 20917187 ~ 20917779 (+) True G377195
TU428740 lncRNA downstream 78459 20921135 ~ 20921358 (+) True G377197
XM_036977016.1 mRNA upstream 71856 20508074 ~ 20759255 (+) False LOC110522816
XM_036977017.1 mRNA upstream 71856 20508074 ~ 20759255 (+) False LOC110522816
XM_036977020.1 mRNA upstream 71856 20508074 ~ 20759255 (+) False LOC110522816
XM_036977018.1 mRNA upstream 71856 20536136 ~ 20759255 (+) False LOC110522816
XM_036977019.1 mRNA upstream 71856 20536136 ~ 20759255 (+) False LOC110522816
XM_021601313.2 mRNA downstream 15666 20858342 ~ 20859762 (+) True pnx
XM_036977024.1 mRNA downstream 39262 20881938 ~ 20897867 (+) True LOC110522818
XM_021602058.2 mRNA downstream 55445 20898121 ~ 20910637 (+) True LOC110523395
XM_021602060.2 mRNA downstream 80338 20923014 ~ 20944043 (+) False ccar2
XM_021602061.2 mRNA downstream 80993 20923669 ~ 20944043 (+) False ccar2
TU428462 other upstream 72610 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 234248 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 847263 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2747746 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 3123354 17704113 ~ 17707757 (+) True G373726
TU428818 other downstream 265493 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1329859 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1329859 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1661076 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1759434 22602110 ~ 22629669 (+) True G378868

Expression Profile