RNA id: TU428679



Basic Information


Item Value
RNA id TU428679
length 1115
RNA type TUCP
GC content 0.50
exon number 9
gene id LOC110522817
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20831111 ~ 20842676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATGGAATCTATCTTGGCTTGAGAAAGAGAACCAGACTGACTGTACATCTTCTGGGGGATGGTTAAACCTGTCTTTGAAGACGGATTTTTTGAATaaggaaaaggagagaaaaaCGAAAGTTGTTCCAGTtgtgatttgttgttgttgtatggtCCACATCCCTCTGCAGCAATGGAGATAGATAGTATGGTGGCGAACAGCGCACTCATCAGAGCCAGAGGAGGTGGAGGGGGAAAAGGCAGGAGTTGGAAATGGAAAGACATGCTGCGCTTCCCTCACATCAGCCAGTGTATGGAGCTGGCAAAAACCCtcgagcgaGACTACTACAGTCTGTGTGTGAAGCAGCCTATCGGCAGACAACTATTCCGTCTCTTCTGTCAGAGCAAACCTGAGCTGCGGCACTGCAACTCCCTATTGGACAAAATGGGGGAGTATGAGGTGAAGTCAGATGAGGAGAAGATGAGTTTTGGCATGCAAATCATTAACAGGTTCCTCAGTAGACAGTCATCTGAGTGTGTACAGGTAGTAGAGCGCTATGGTGAGAAGTGTAGGGAGAGTCTGGAGGAGCAGCACAGTAGAGAAGTCTTCATTGACTgcacagaTGACCTCCATGAGTACCTGAGCGGTGCCCCCTTCCTTCAGTACCAGCAGAGCATGTACTTTGACCGTTTCCTGCAGTGGAAGATGGTAGAGAGACAGCCTGTTACCAAACACATCTTCAGACAGTACAGGTTGCTTGGCAAGGGAGGCTTCGGGGAGgTGTGGGCATTCCAGGCACGTGCCTCTGGGAAGATGTATGCGTGTAAGAAGCTGGAGAAGACTCACGTGaagaaggggaaaggagaggccATGGCCCTCAATGAGAAACAGATACTAGAGACACTTAACAGCAGATTTGTGgtcaGTCTGGCGTACGCGTATGAAACCaaacagtctctctgtctggtgcTGACCATAATGAACGGAGGAGACCTGCGGTTCCACATCTATAACATGGGTACTTCAGGCCTGGAGCAGGACAGGGTTCAGTTCTATGCTGctgaggtctgctgtggtctccaccacctccaccagatGAACAttgtctacaggtcagtagacACTGGCTCCATCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU428652 lncRNA upstream 70773 20759746 ~ 20760485 (+) True G377125
TU428651 lncRNA upstream 71242 20759746 ~ 20760016 (+) False G377125
TU428633 lncRNA upstream 88615 20709523 ~ 20742643 (+) True G377107
TU428632 lncRNA upstream 122113 20708923 ~ 20709145 (+) True G377106
TU428631 lncRNA upstream 125361 20705691 ~ 20705897 (+) True G377105
TU428677 lncRNA downstream 8743 20845302 ~ 20846940 (+) True G377143
TU428678 lncRNA downstream 13095 20849654 ~ 20851140 (+) True G377144
TU428729 lncRNA downstream 77593 20914152 ~ 20914533 (+) True G377186
TU428738 lncRNA downstream 80628 20917187 ~ 20917779 (+) True G377195
TU428740 lncRNA downstream 84576 20921135 ~ 20921358 (+) True G377197
XM_036977016.1 mRNA upstream 72003 20508074 ~ 20759255 (+) False LOC110522816
XM_036977017.1 mRNA upstream 72003 20508074 ~ 20759255 (+) False LOC110522816
XM_036977020.1 mRNA upstream 72003 20508074 ~ 20759255 (+) False LOC110522816
XM_036977018.1 mRNA upstream 72003 20536136 ~ 20759255 (+) False LOC110522816
XM_036977019.1 mRNA upstream 72003 20536136 ~ 20759255 (+) False LOC110522816
XM_021601313.2 mRNA downstream 21783 20858342 ~ 20859762 (+) True pnx
XM_036977024.1 mRNA downstream 45379 20881938 ~ 20897867 (+) True LOC110522818
XM_021602058.2 mRNA downstream 61562 20898121 ~ 20910637 (+) True LOC110523395
XM_021602060.2 mRNA downstream 86455 20923014 ~ 20944043 (+) False ccar2
XM_021602061.2 mRNA downstream 87110 20923669 ~ 20944043 (+) False ccar2
TU428462 other upstream 72757 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 234395 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 847410 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2747893 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 3123501 17704113 ~ 17707757 (+) True G373726
TU428818 other downstream 271610 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1335976 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1335976 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1667193 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1765551 22602110 ~ 22629669 (+) True G378868

Expression Profile