RNA id: XM_021601313.2



Basic Information


Item Value
RNA id XM_021601313.2
length 1093
RNA type mRNA
GC content 0.44
exon number 2
gene id pnx
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20858342 ~ 20859762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGACACGGGGATGTAAGGTGGCGCGCGCAGTGGTACTCGAGTTATCTACCACCTCCTTCACTGAAAAACGTGCGCATTTTCGTCCAAATTTACACAACAGATAATTAAAATGCAGCCAGAAAAGTTGTCACTGGTTAGCAGAACCTCTTTCTCTGTAGCAGACATCATGGATCCGTCTAAATTCACTGGGAGTCCAAGCAGTACCCATCCGAGCCATGGTTCAACTGCTGAGAGTGATGCTGCAAGACAGACCACAGGTGGGGCAGCCATTCCAGAAAGCCATTCCAAGAGATTAGAATTCCCAAGTGGTCCAGCAGCCAGTAAATGCTCCACCACAGTGGACTCAGTGGAAAGGGAGTCTCACCCTGCATCTGTGTGCCGTAGCCTGGAGAGGTCAAAGGGCAAGTCACGGCGGGTTCGGACAGCGTTCACCTTGGATCAACTACACATTCTAGAACATAGTTTCCACAGCAGCCACTACCTGTCTGTGTTTGAGCGCTACGCCATCGCCTTGATGCTCTGTCTCACAGAGACCCAGGTTAAGATCTGGTTCCAGAACCGACGCACCAAGTGGAAGAAAGAGTGTGAGGGGAAAGGGCTGCCTGAGCAGCAGCTCCAGTGTGGGGTCAGGTACCCCTCACCTGCTCCTATCTATCCTACAACCTTTCCACTGTACAACAAAATGCATTTTCACCAGGGACCACAGATTCAAATGTTCACGCCACCAACCTTCCTCACTCCACAATACAACCATCATCAATTTTAGATGAGAAAATTTTTAGCTTACCATTTGCACAAATTATGGTTGTGGTTTCAATCAGATTGAGCTCACAGTTTAGACACTATAACCTGCTATGTCATAAAGGTATTTGTGCAATGTAATAGGCCACTGTAAATTAATATCAGTATTTATGAGTTACTATTTATGTGTTGTTTAAAAGCCAGTGGAAAACTATGTCAATCTATTCCATATGCCGAAGGATTATTGCTGTGAAATGTTAAATGATAGGGTTATTTTCTTATTGTTAAAAGGTGTTGACTTATTTGGATGTAATGTCCATACACAAAGATTAAATATTTTTGTACTGTACCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU428678 lncRNA upstream 7202 20849654 ~ 20851140 (+) True G377144
TU428675 lncRNA upstream 11402 20800061 ~ 20846940 (+) False G377143
TU428677 lncRNA upstream 11402 20845302 ~ 20846940 (+) True G377143
TU428652 lncRNA upstream 97857 20759746 ~ 20760485 (+) True G377125
TU428651 lncRNA upstream 98326 20759746 ~ 20760016 (+) False G377125
TU428729 lncRNA downstream 54390 20914152 ~ 20914533 (+) True G377186
TU428738 lncRNA downstream 57425 20917187 ~ 20917779 (+) True G377195
TU428740 lncRNA downstream 61373 20921135 ~ 20921358 (+) True G377197
TU428741 lncRNA downstream 62115 20921877 ~ 20922095 (+) True G377198
TU428725 lncRNA downstream 83830 20943592 ~ 20944038 (+) True ccar2
XM_036977023.1 mRNA upstream 15666 20831111 ~ 20842676 (+) False LOC110522817
XM_036977020.1 mRNA upstream 99087 20508074 ~ 20759255 (+) False LOC110522816
XM_036977024.1 mRNA downstream 22176 20881938 ~ 20897867 (+) True LOC110522818
XM_021602058.2 mRNA downstream 38359 20898121 ~ 20910637 (+) True LOC110523395
XM_021602060.2 mRNA downstream 63252 20923014 ~ 20944043 (+) False ccar2
XM_021602061.2 mRNA downstream 63907 20923669 ~ 20944043 (+) False ccar2
XM_036977025.1 mRNA downstream 63907 20923669 ~ 20944043 (+) False ccar2
TU428679 other upstream 21783 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 99841 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 261479 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 874494 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2774977 18067443 ~ 18083365 (+) True arhgef28a
TU428818 other downstream 248407 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1312773 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1312773 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1643990 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1742348 22602110 ~ 22629669 (+) True G378868

Expression Profile