RNA id: XM_036977024.1


Basic Information

Item Value
RNA id XM_036977024.1
length 3327
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC110522818
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20881938 ~ 20897867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCAAGAAGCAGAAAGCCAACAAGGCGCCCAAAGCCCCGAAACCCACTAAAAAACCCAAAGCCACCAAGGCACCCAAGAAGCTCAAAGCCACCAAGGCACCTAAGGTCACAAAGCCCAAAGCTACCAAGGCCTCCAAGACAACAGcatggaaggaggagggggtgaAGCCGGTGACCAGAAGACCCAgtctggaagaggaggaggagaaactcCTGATTGAGCTGGGCTGGGATAGacACAGCAGACCCTCaggacacacacctctctctgctGGCTCCAAGACCCTGACAGAGCATGGTCAAGATTACTGGGACACCAAGCtggacagagagaggactaCCACTGAGGTCATCATGTATGTATCAGAGGAAACCACAGTGCCCTGGTACGAAGAGTATGATTATGCAGACTtggcAGCTAAACAACTcaaggaggaggcagagaaagcTCGCAAGGAGAAGGAGGAAAAAGTGAAGCGGCTGAGGAAGAagtgggaggaggaagaggaggagaggctgaggaAGATTCCAGTACATGCCGAACCCAAGAAATGCCCTCCTCTAGGTCTGGAGTCCCATCGTGTTGACGATGACCAGCTGCTGGCCTCTTCTCAGTCTCACCACGGCTTCTCTGCTCAGCGGGGCAGGCTCAACATGCAGAGCTCTGGTAATGAGGAGGGTGTGTACGGGGGTGCGTGGTGTGCTGAGCCAGAGGAGAAGAACCACTGGTTTGAGGTGGACGCTCGCAGAGAGGTGGAGTTCACTGGAGTCATCGTACAGGGCAGGAACTCAGACACAGCgGAAGATTTTGTGTCCACGTTCTACGTGTCCTTCAGTAATGACAGTCGTGATTGGACGGTGCTCCATGATGGCTATGCTGAGTGGttgtTCTATGGGAATGTGGATAGGGACTCTCCAGTGATGGTGCAGTTTGATTGGCCAACCGTGGCACGTTACATCCGTGTCCTTCCCCAGAGCTGGAACGGCAGCCTGTGTCTCAGAGTTGAGGTCATGGCCTGCCAACTGACCAGCAGCTTCCGTAGTGAGAATGAGGTCAACCCCACAGACAACCTTGACTTCAGACACCACAACTATAAGGACATGAGACAGaTGATGAAGGTGATAAATGAGGAGTGTCCTAACATCACTAGGATCTATAACATTGGGAAGAGCTCTGCAGGCCTGAAGATGTATGCCATGGAGATCTCTGACAACCCCGGGGAACACCAgacagGTGAGCCGGAGTTCCGCTACACGGCGGGTCTCCATGGTAATGAGGCACTGGGGCGGGAGCTGCTCCTCCTGCTGATGCAGTTCATGTGTAAGGAGTATAATGAGAACAACCCCAGAGTGCGCCGCCTGGTGGAGGGAGTGAGAATACACCTGGTTCCCTCACTCAACCCAGACGCCTACGAACTGGCCTACGAGATGGGCTCTGAGATGGGGAATTGGGGTCTGGgccactggactgaggagggATACGATATCTTCCAGAACTTCCCGGACCTCAACAGTGTTCTATGGGGGGCAGAGGACAGAGGCTGGGTCCCACGCATTGTACCTAATCACCACATCCCACTCCCAGAGAACTTCCTCAATGGCTCGgttgCCCTGGAAACCAAAGCCATTATTAACTGGATGGAGCGGACCCCATTTGTGTTGGGAGCCAATTTGCAGGGTGGAGAGAAAGTGGTGGCGTACCCGTTTGACATGCAGCGACCTCCAAAGGCTACATGGACTTTGGGGTCTCAGCGTGAGTTGAGACCCGGTGTGAACCATGAGATGAATGAGGAAACGTGGGCCCGGATGCAGCGTCAGAATGGGGACGCGCTACGAGAGACGTCTGACGACACCATGTTCCGCTGGCTGGCCATGTCGTACGCCCACAGCCACCTGACCATGACGGAGACCCAGCGGGGCTCGTGCCACACAGACGACATCTCTGGGGGACAAGGCATCATCAACAGGGCCAGTTGGAAACCTGTGGTGGGAAGTATGAATGACTTCAGCTACCTGCACACTAACTGCTTTGAGCTGTCTGTCTTCCTGGGCTGTGACAAGTTTCCTCATGAGAGTGAGCTTCCTCTGGAATGGGAGAACAACCGGGAGGCACTACTGTCCTTCATAGAACAGGTGCATCGTGGGATAAAGGGCATAGTGAGGGACATGGAGGGTAAACCCCTGGCCAACGCCACCATTTCTGTGGACGGCGTCAAGCACGATGTCAAGACTGCTGCGGCTGGTGACTACTGGCGGTTGTTGAACCCCGGGGAGTACCGTGTGACGGCTCGCGTCGACGGCTACACGCTCCAGACCCGGCTGTGCATTGTGGGCTACGACTCCGGAGCCACCCCCTGTAGCTTCACCCTGGCCAAGTCCAACTGGGACCGAATTAAGCAGATTATGGTCCTCCACGGCAAGAGGCCCATACGGCTTGTTACCAAAGCACCCCCCCGGGTAGGAAGTGACATCAGCGGTGGGTCAGTTGGCAGCGTAGACGCAACAAAGATGGGCGCCACTGGCGGGATGGGCGGGACGTCGGCCAACTCCCATAATGCAGAGCGTCTCCGGCGGTTACGGCTGATGCGCCTGCGCAAGATGCACCAGCAGAGACTCAGGTATAACTTCTCCACCGCCACGCCCGTTGCCACGACGACCACCACGGCGGCCCCCACAACGACAGCGGAGCTGGAGACAGAGAGCACTACTTCCTGGTATGACTCGTGGTTCCCTGTGGAGAGTTCGTACACAGAGCCCACACCTGCCGAGGTCTTCACAGAGATCCAGGAGTCAGAGCCTACACAGGACTACACCTCTGAGTACAAGTTCGAAGATTACTAAGGTGAATTTAATTAAATTGCTAAAGTAACAAATTACAGTTTTTAAAAACACAATCATTATTCAAATTGTGTGAaattaaaaacatatttaattcCTTGCAGAGCTGAAAGAAAATatagcatttaaaaaaaacactttttatAAATAATACTTTCTCTGTGCTCTTCCATTTATGTCTCATGATGGTCTGTATTCTGATATTTTTTGTAATGCTCACACATAGATCAGAGAATAGTCTGCATTCTCTCTCTGCAGAGCAGGGAGTTAACAGCATGTTTTTCATATTATTTACTTAAGCAAGCCTATTCTGAGACGTAGATATAGGGTGCTTCAAATGTTTCACAATAAAAGAGTATAAACAGGTTATTTGACACACGCTGAAGTCATGCTTTGCCTCAAAACGTGGATTCTTATGTTTGGTTAGATATGATTACTAATATCTATGGAAACTGCGGTGTGTTTGTATTATTACATTAAAAGTGTTC

Function

GO: NA

KEGG:

id description
K21392 AEBP1; adipocyte enhancer-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428678 lncRNA upstream 30798 20849654 ~ 20851140 (+) True G377144
TU428675 lncRNA upstream 34998 20800061 ~ 20846940 (+) False G377143
TU428677 lncRNA upstream 34998 20845302 ~ 20846940 (+) True G377143
TU428652 lncRNA upstream 121453 20759746 ~ 20760485 (+) True G377125
TU428651 lncRNA upstream 121922 20759746 ~ 20760016 (+) False G377125
TU428729 lncRNA downstream 16285 20914152 ~ 20914533 (+) True G377186
TU428738 lncRNA downstream 19320 20917187 ~ 20917779 (+) True G377195
TU428740 lncRNA downstream 23268 20921135 ~ 20921358 (+) True G377197
TU428741 lncRNA downstream 24010 20921877 ~ 20922095 (+) True G377198
TU428725 lncRNA downstream 45725 20943592 ~ 20944038 (+) True ccar2
XM_021601313.2 mRNA upstream 22176 20858342 ~ 20859762 (+) True pnx
XM_036977023.1 mRNA upstream 39262 20831111 ~ 20842676 (+) False LOC110522817
XM_036977018.1 mRNA upstream 122683 20536136 ~ 20759255 (+) False LOC110522816
XM_021602058.2 mRNA downstream 254 20898121 ~ 20910637 (+) True LOC110523395
XM_021602060.2 mRNA downstream 25147 20923014 ~ 20944043 (+) False ccar2
XM_021602061.2 mRNA downstream 25802 20923669 ~ 20944043 (+) False ccar2
XM_036977025.1 mRNA downstream 25802 20923669 ~ 20944043 (+) False ccar2
XM_021602063.2 mRNA downstream 54282 20952149 ~ 20991341 (+) False LOC110523398
TU428679 other upstream 45379 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 123437 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 285075 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 898090 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2798573 18067443 ~ 18083365 (+) True arhgef28a
TU428818 other downstream 210302 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1274668 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1274668 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1605885 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1704243 22602110 ~ 22629669 (+) True G378868

Expression Profile