RNA id: XM_021602063.2


Basic Information

Item Value
RNA id XM_021602063.2
length 1947
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110523398
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20952149 ~ 20991376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGTtccactctgagagccctcactTAACTTCAACCGGCAATATCCACATTTCTTTGGACTTTCAAATCATATTCTGGCGAGTGGCAAGGACCTTCAACACTTTCCATTCAGTTAAGGTGTAGGTGTATATTGGTTGACACTCCATATTCTTGAATCTTGTCTAGAGCTGCAATAAACCAGACAGCGTTCCAAACAAAAGCCACTGAATGACTTGGCTATAGCCGACAGCCTACATGCATTGTTTTTATCTAGCTATAGCTTGATTTAGTACATTTTTATTGGTGCCCAGCTAAACTGTGAATAACTGTGAATAGCTATGAATAAATCTAAGCTAGCAATCGGACTTTTAGTCGTTGGCACTCTGACGCTAGTTTTTGGAACAGTTATAGTTTTCGTTGGACCAATCATTATCGACAACCAAATAGTCAAGAACTTAGTGATAGACCCTAAGAATGAGATGTCCTACACCATGTGGAAGGATGTCCCTGTCcccttcttcatgactgtctaTTTCTTCAATGTCCTGAACCCTACTGAAGTCCTGGCTGGAGAGAAACCCATGGTGGAGCAGAGAGGACCTTATGTATACAGGAAGCATATTCAGAAGCAGAACATCACGTTCCATCCAAACCACACTGTGTCGTATCTTGAATACAGGAGCTACTTCTTTGAGCCCAGCATGTCAGTGGGCAATGAGTCGGATGTGGTCACCATCCCCAACATGCTGGTGTTGGGTGCAGCAGTGATGATGGAGAACTTGCCGTTCGCAGTGCGTCTGATGATCAGCACCACCTTCAAGACCTTTAAGGAGGGACCTTTCCTCACCAAGTCTGTAGGAAAGCTGATGTGGGGCTACGACAGCAAGCTGGTGGACTTCCTCAATAAATGGCTCCCTGGGATGCTGCCCTCCACTGGCAAGTTTGGCCTTTTTGCTGAGTTCAACAACTCAAACACTGGTTTGTTCACAATCCACACTGGCAAAGATGACATCAGGCTGATTCACAAAGTGGACTCATGGAATGGCCTGACCAAGTTGACCAATTGGAAGACTCCTCAGTGTAACATGATCAATGGTACAGCAGGACAAATGTGGCCTCCCTTCATGACTAAAGAATCTACACTGCCCTTCTACAGTCCTGACgcctgcagatCTTTGGAGATGGTGTACCAGCGTGAGGGGATAATGGAGGGGATTCCTCTGTATCGTTACGTGGCACCTAAGACTCTGTTCGCTAATGGCTCAGACTACGCTCCCAACGAGGGATTCTGTCCCTGCAGACAGTCTGGCCTCCTCAACGTCAGCAGCTGCAGATCCAACTCCCCAGTGTTTATCTCCCACCCGCACTTCTACAATGCTGACCCTGTCCTGCTGGACTATGTACAGGGACTTCAGCCTACTGAGGACCAACATGGACTCTTCATAGACATCCACCCTGAGACTGGTGTACCTCTGAATGTGTCTATCCGTCTGCAGCTCAACTTGTATATGAAGAAAGTGTCTGGGATCACGGAAACGGGGAAGATCTCTGAGGTGATGATGCCCATGATGTGGTTTGAGGAGAATGGTTATATCGACGGTGAAATCCTGGCGACGTTCCACACTAACCTGGTGCTATTGCCAATGGTGATGGTGTACATGCAGTACTGTTTCATAGTCCTGGGCCTGGCCACCGTACTGGGGGTtgtactactatactacaggAACAAGGCATCTGTTAAAGACACCGTAAACAGCGCAGATGCCCTCAAACAACAGACGGACAAATGTATCGTGAATGACACAGATAAGATGTGAGAGGACTGTCATACAGGACACCAACGGGAGCGAACAAACCCCTCTACTACAGCACTGGGTGGACACACACAGATAGCAGTCTAGCCCAGTGCTGCAGGGCTCTGTGTTTGAGACTGAAACCCTATAGCCACTGACTGacaattctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428725 lncRNA upstream 8111 20943592 ~ 20944038 (+) True ccar2
TU428741 lncRNA upstream 30054 20921877 ~ 20922095 (+) True G377198
TU428740 lncRNA upstream 30791 20921135 ~ 20921358 (+) True G377197
TU428738 lncRNA upstream 34370 20917187 ~ 20917779 (+) True G377195
TU428729 lncRNA upstream 37616 20914152 ~ 20914533 (+) True G377186
TU428726 lncRNA downstream 2364 20993705 ~ 20996708 (+) True G377184
TU428787 lncRNA downstream 28321 21019662 ~ 21019907 (+) True G377240
TU428788 lncRNA downstream 31364 21022705 ~ 21023369 (+) True G377241
TU428790 lncRNA downstream 33623 21024964 ~ 21025268 (+) True G377243
TU428798 lncRNA downstream 42601 21033942 ~ 21034516 (+) True G377251
XM_021602060.2 mRNA upstream 8106 20923014 ~ 20944043 (+) False ccar2
XM_021602061.2 mRNA upstream 8106 20923669 ~ 20944043 (+) False ccar2
XM_036977025.1 mRNA upstream 8106 20923669 ~ 20944043 (+) False ccar2
XM_021602058.2 mRNA upstream 41512 20898121 ~ 20910637 (+) True LOC110523395
XM_036977024.1 mRNA upstream 54282 20881938 ~ 20897867 (+) True LOC110522818
XM_036977026.1 mRNA downstream 59595 21050936 ~ 21099289 (+) True LOC110522819
XM_021602067.2 mRNA downstream 116788 21108129 ~ 21160140 (+) False LOC110523400
XM_021602076.2 mRNA downstream 286227 21277568 ~ 21288531 (+) True npm2b
XM_021602081.2 mRNA downstream 482512 21473853 ~ 21477171 (+) True LOC110523406
XM_036977038.1 mRNA downstream 487344 21478685 ~ 21493435 (+) False LOC110523407
TU428679 other upstream 115590 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 193648 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 355286 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 968301 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2868784 18067443 ~ 18083365 (+) True arhgef28a
TU428818 other downstream 116828 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1181194 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1181194 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1512411 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1610769 22602110 ~ 22629669 (+) True G378868

Expression Profile