RNA id: XM_036977026.1


Basic Information

Item Value
RNA id XM_036977026.1
length 3609
RNA type mRNA
GC content 0.52
exon number 27
gene id LOC110522819
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21050936 ~ 21099289 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATCTGTCGTTGGTGCAGGACAGTTGTATGCAGCAGAGCCCAGAGTGACATTGAGACCTGCGTCCATTACTGAATCTATTATTAGTTCATCATTAACTTAATTCCTCTCAGTTCAACTCTAACTGTCTGCTCAGgatgGCACATGATTGGCAGGGAGGTAGAAGTAGGAGTCACCACCGATATGAGGAAGATGATGAAGaacccCAGCCAGTGTATATTGGTGTTCCGTTAACACACGGTTACAGTAAAAGGAGACGGCGTAAACACCGCTCCCAACGCGAGAAACATCACACCCACCATGATCAACACACacagcacgaacacacacaccatgaccatCACTATGACAACCAGGAACACtatgaagatgaggaggagatggaaCAACATGACATATTTCACCCTGACTCCACAGTGTCCCCGGCGGCGGAGAGGCTGCGTTACATCCTGGGTGAAGATGATGACTTGCCGACGCCCACTCTGttcacagagatggacacacTGCAACACGATGGAGACGATATGGAGTGGAAAGAGTCTGCtagGTGGGTGAAGTttgaggagaaggtggaggagggaggagagaggtggagtaaGCCCCATGTGTCCACCTTGACCCTCCACAGTCTGTTTGAGTTGAGGACCTGTATACAGACTGGCAGTGTACTGCTGGATCTGGAGGGATACTCACTGCCAGAGatagtggATGACATTGTGGATCGCCAGGTAGCTGATGGTCTGATTGGTCCAGAGCTGAGGGAAAAGGTCAGCTTCGTGTTGCTACGGAAACATCGCCACCAGCATAAGAAACCCATGCATCGCTCACTAGCCGACATGGGCAAATCAAACAATTGCCCcgccagccgtAGTCCCCAGTCTGTTCATAGTGCCAGCCGTACTAACTTCAGTCGTAGTCCTAGTTCAGCCTCTGGCCTCCATCGTTCTACAGAAGACCTACGTGCCAAGTCAGGCAGCCTTGCCCGCCTGCATCATGCGCAAAGCCGAAGTATGAACGATATTTCAGACACACCAAGCACAGACCAGCTGAAGAACAAGTTCATGAAGAAGATTCCTCGTGATGCCGAGGCGTCTAACGTTCTGATTGGAGAAGTGGACTTCCTGGACAAACCATTTGTAGCGTTCGTACGTCTGGCCCAAGCTACCACACTGGGAGGCCTGACCGAGGTCCCCGTACCTACCAGGTTTCTGTTTGTCTTGCTTGGTCCTCATGGCAAAGGCAAGTCCTACAACGAGATTGGTCGAGCCATTGCTACGCTCATGGTGGATGACTTGTTTAGTGATGTGGCGTATAAAGCCCGGGACCGTGATGACCTGATCGCTGGGATTGATGAGTTTCTGGATGAGGTCATCGTTCTGCCACCAGGGGAGTGGGACCCAAAAATACGCATCGAGCCCCCCAAGAAAGTCCCCTCTGCCGACATGAGGAAGTCTGTGCTGAACCTGAACGAGCTGGGCCAGGTAAACGGGGCGGTCGggggggcaggaggaggagaggacgaggagaTGCCCGCCCCCCACGAGCTGGGAGAGGAACTGCAATTCACTGGCAGGTTCTGTGGAGGCCTGTGGCTGGACATTAAGAGGAAGGTTCCGTGGATCCTTAGTGATTTCTCCCAGGGATTCCACATCCAGTCCATCTCTGCTGTGCTGTTCATCTACCTGGGCTGCATCACCAACGCCATCACCTTCGGAGGCCTGCTGGGAGATGCCACAGACAACTACCagGGTGTGATGGAGAGTTTCCTAGGTACAGCGTTAGCAGGTACAGTGTTCTGTCTATTAGGAGGTCAACCTCTCATCATCCTCAGTTCCACTGGACCCATCCTCATCTTTGAGAAACTGCTCTACGAGTTCTGCAAGTCTAACACTATAGATTATATGGAGCTGCGTCTGTGGATTGGTCTCCACTCCTGTCTGCAGTGTCTGATCCTGGTCGCCACGGACGCCAGTTACATCATCAAATACATCACACGCTTCACTGAGGAGGGCTTCTCCAGCCTCATCTCCTTCATCTTCATCTCTGATGCCATTAAGAAGATGGTGGGATCCTTCAAGTACTACCCTATCAACCGTGGCTTCAAGCCTGACTACGTTACCTCATACAAGTGTGAATGTATCGCACCAGACCAGGcCGCTGCAATGGGTTTGAATGTTTCAGTTCCACTAGCGGACGATAACATGACTGATTTGTATAACATAACAGGTCTGGACTGGAGTCAGCTGAGTAAGAAGGAGTGTGTGAAGTATGGCGGCGCCCTGTTGGGAAACACCTGTAAGTACGTCCCTGACCTGGCCCTCATGTCCTTCATCCTGTTCTTCGGGACCTACTCCATGACCGTCTCACTCAAGAAGTTCAAGACCAGCCGGTACTTCCCCACCATGTGCCGCTCCCTGATTGGTGAATTCTCGATCATCATCTCAATCCTGGTATTCTGTGGGATAGACTACCTGTTAGGGCTGGAGACGCCCAAACTGCACGTGCCCACTGAAATCAAGCTGAGGAAGCTGATCAGTGATTTCTCCATCTTCATGTCAATCATGACGTTTGTGGGTCTGGATATGCTTGTAGGGCTGGACACACCCAAACTAATCGTACCCACAGAGTTTAAGCCGACGCGTCCAGACCGTGGCTGGTTGGTGATGCCGTTTGGTAAGAACCCGTGGTGGGTGTACGTGGCCAGCGCCGTTCCTGCTCTCCTGGTCACCATCCTCATCTTCATGGACCAACAGATCAGCGCTGTCATCGTCAACCGCAAAGAGAACAAACTCAAGAAAGGTTGTGGGTACCATCTGGACCTGTTCTGGGTGGGTATTCTGATGGCAGTGTGTTCCTTCCTGGGCCTGCCCTGGTACGTGGCTGCCACTGTCATCTCCATCGCCCACATCGACTCTCTGAAGATGGAGAGTGAGTCCAGCGCCCCAGGAGAGCAGCCCCAGTTCCTGGGAGTCAGGGAACAGAGGTTGACGGGTATTCTGGTGTTTGTCCTAAATGGAGTCTCTATCTTCCTGGCTCCTGTCCTGCAGTACATCCCCATGCCTGTTCTCTACGGTGTCTTCCTTTACATGGGAGTGGCCTCACTTGCTGGAATACAGTTCTGGGAGCGTATAAAGCTGTACCTGATGCCAGCCAAGCACCAGCCAGACTTCTCCTTCCTGCGTCATGTTCCTCTGAGGAGGGTTCACCTGTTCACCCTGGTCCAGATCATCTGTCTGGCTGTCCTCTGGATCCTCAAGTCTACTGTCGCTGCCATCATATTCCCTGTCATgATCCTGGGTCTGATGGTGGTGCGTAAGATGATGGACCTGATATTCTCTCAACATGACCTGGCCTGGCTGGACGACATCCTGCCAGAGAAAGACAAGAAGAAGGAGAAAGGGGGGAAGAAAAAGAAAGACAACAAAAAGACCAAAGCAGCAGCAGAGACGGAGAGCGACGAGGAGTGTTGCTGAAAAGGCACTGTATAACACTTACTACTGTCTGTCtcgacgtctgtctgtctgtctcgacgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgggcatc

Function

GO: NA

KEGG:

id description
K13857 SLC4A5, NBC4; solute carrier family 4 (sodium bicarbonate cotransporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428812 lncRNA upstream 6940 21043689 ~ 21043996 (+) True G377261
TU428798 lncRNA upstream 16420 21033942 ~ 21034516 (+) True G377251
TU428790 lncRNA upstream 25668 21024964 ~ 21025268 (+) True G377243
TU428788 lncRNA upstream 27567 21022705 ~ 21023369 (+) True G377241
TU428787 lncRNA upstream 31029 21019662 ~ 21019907 (+) True G377240
TU428805 lncRNA downstream 1042 21100331 ~ 21103100 (+) True G377255
TU428844 lncRNA downstream 13605 21112894 ~ 21125541 (+) True G377292
TU428847 lncRNA downstream 48042 21147331 ~ 21151990 (+) False G377293
TU428848 lncRNA downstream 48042 21147331 ~ 21150450 (+) True G377293
TU428849 lncRNA downstream 53125 21152414 ~ 21153105 (+) True G377294
XM_021602064.2 mRNA upstream 59560 20952149 ~ 20991376 (+) False LOC110523398
XM_021602063.2 mRNA upstream 59595 20952149 ~ 20991341 (+) False LOC110523398
XM_021602062.2 mRNA upstream 68533 20952150 ~ 20982403 (+) False LOC110523398
XM_021602065.2 mRNA upstream 68535 20952166 ~ 20982401 (+) True LOC110523398
XM_021602060.2 mRNA upstream 106893 20923014 ~ 20944043 (+) False ccar2
XM_021602067.2 mRNA downstream 8840 21108129 ~ 21160140 (+) False LOC110523400
XM_021602076.2 mRNA downstream 178279 21277568 ~ 21288531 (+) True npm2b
XM_021602081.2 mRNA downstream 374564 21473853 ~ 21477171 (+) True LOC110523406
XM_036977038.1 mRNA downstream 379396 21478685 ~ 21493435 (+) False LOC110523407
XM_036977039.1 mRNA downstream 379411 21478700 ~ 21493435 (+) True LOC110523407
TU428679 other upstream 214377 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 292435 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 454073 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1067088 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2967571 18067443 ~ 18083365 (+) True arhgef28a
TU428818 other downstream 8880 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1073246 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1073246 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1404463 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1502821 22602110 ~ 22629669 (+) True G378868

Expression Profile