RNA id: XM_021602067.2


Basic Information

Item Value
RNA id XM_021602067.2
length 1931
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110523400
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21108129 ~ 21160149 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCATCCCTATTTCCGGTTTGTGATCCAAACACTTATCCGTTTTGATCCGAAAGAACTGTAGCCAGACTGATAGACGACAACCATCATAGGAGAAATGGCAGAATTCACGGATAAATTCAGCTCTTTCACCATGACGCAGTTAAACGAGTTACTTGAAGACGATGAAAAGTTAAATTCTATTGTCAAAGAAATGAACGAGATGTGTGAGGTGCAGCAGGTGAAGGAGCTGACCCTGGTCAGTAACATCAGTCTGGCAGAACAGAACCTCCAACTGCAGCCCAGTCTGGACCTTCAGAAGAACCAGCTCACTTCACGCTACCGCCACCTACAGGAGCTCTATGACAACTACCAGCTACGCAAGTCCACTCTCTACCATGGTTCAGGCAACAGCTCTCTGGACATTCTGCTGGCTCTGCTGCAAGCTGAGGGAGCCAAGATAGAAGAGGAGACTGAGAACATGGCAGACTCGTTTCTGGATGGAGAGCTGCCTCTGGACTGCTTTATCGATGACTACCAGCGGAGGCGCCATCTTGCTCATGTGCGCCGTGTAAAGATTGACAAACTCCGTGAGCTGGTGCTGAAGGGTCTCACTAGACCCCAGCAGACCCCTACCCAGCCCAGTCGACCCCAGGACTTCCCCTCTACCCCCTACACCAATGGAGCCTTGTCCCCCCAATCTACGCGAGCTGcccatcctccctcccctcagcagAGCGGCCTGTCATACCAAGTGGCCCCCTATCCCGCCATGTCTTTCCCCAGCCAGGATCCTCCAGGCTACCCCAGCAGCCCCTACATTCCCCAGCCCTACCCTCAAGCCCCCCAGCAACACCCCACCTCCCCATGCCTGCCCCCCCGAACTGGCTTCATCAtgcagtgagggggggggggggggtctgtctcCATAGAAACACCATGGATGATGACCTTATCTACCTTTGACCCAACAATGAGTGTTGGTGACTTAACCAATGACAGCCCCTGTCAGTAACACAGGGAAAACTCCTGACAGGCTCCCTCAGAGACTCCGTCCAGTAGCTACAGCCTGGGGGTTGATTCTCTTAGGTTTTTATTCTAAGACTAGCTTTCTGATTAATCTGAAGAAATATGAAAACTTAACTCTCTGACTGGTATTTATATGCGGTGTAGATGAGATGtagtttttgtaaactgaaggtGGTGTCTTCCTGTGCACACACTTGAGTATGCGTGAAGTTGTGTGTAACCCCAAAGGTCAGGACAGGTGGTGTGATAATAGTTGACCCTAAAGTTCCTAGTCGTCTAAAGGGAGGAGTCTGGATTTGTCACAACTATAGCTAGTCCATCAACCCTGAACAGAACTACTCAAATTGATttcaattcaaaatgtattgTAATCTAGGTGCTTTCCTATTCATTGGTGGAGGTTCTTTCCAGTAGGTCGGGAGGATGCAAGGCTGGGAATATACTATTTTACAAGGGAACTAACATTTTGGGATGGATTTGAATGACCTGCCAAAGATGTTCTCATCTTACCTATTGACTTGGCACTTTGTTTTAGTGATTGTTTTGTATACCGGTATAAGAGGTACCCCACCTAACTGGAAGATGGATATTGAAAATAACCATGCATCCTAAATTAATGTTACACTGGCTTTCTTGTGAAGCCAGTCAAAGTTGCCATGTGGGGAAAAGAGATCTACAGCTGGCTGTACATCTACAGTTTGCTTTCCCCATTTGTGCTCACCTCAAGGAAAACACATGGGGGTTAAAAAATGAGATGGTGCAGGAAACATTTAAAATATGAATATAGTATAGTAGTCCCTGGTACTGTACATCTGATCTACACTCCCTAGGAACAAACATTCATGTTGTAATGCTAGACTGACAGGTTGACTTTCATCCAAATCAATAAATGTTTTATAACCAATACTAAGGTGTTCTATGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428805 lncRNA upstream 5029 21100331 ~ 21103100 (+) True G377255
TU428824 lncRNA upstream 36547 21071374 ~ 21071582 (+) True G377272
TU428812 lncRNA upstream 64133 21043689 ~ 21043996 (+) True G377261
TU428798 lncRNA upstream 73613 21033942 ~ 21034516 (+) True G377251
TU428790 lncRNA upstream 82861 21024964 ~ 21025268 (+) True G377243
TU428854 lncRNA downstream 659 21160799 ~ 21161204 (+) True G377299
TU428856 lncRNA downstream 2314 21162454 ~ 21162971 (+) True G377301
TU428858 lncRNA downstream 4989 21165129 ~ 21165486 (+) True G377303
TU428879 lncRNA downstream 43182 21203322 ~ 21203616 (+) True G377322
TU428919 lncRNA downstream 133262 21293402 ~ 21294594 (+) True G377356
XM_036977026.1 mRNA upstream 8840 21050936 ~ 21099289 (+) True LOC110522819
XM_021602064.2 mRNA upstream 116753 20952149 ~ 20991376 (+) False LOC110523398
XM_021602063.2 mRNA upstream 116788 20952149 ~ 20991341 (+) False LOC110523398
XM_021602062.2 mRNA upstream 125726 20952150 ~ 20982403 (+) False LOC110523398
XM_021602065.2 mRNA upstream 125728 20952166 ~ 20982401 (+) True LOC110523398
XM_021602076.2 mRNA downstream 117428 21277568 ~ 21288531 (+) True npm2b
XM_021602081.2 mRNA downstream 313713 21473853 ~ 21477171 (+) True LOC110523406
XM_036977038.1 mRNA downstream 318545 21478685 ~ 21493435 (+) False LOC110523407
XM_036977039.1 mRNA downstream 318560 21478700 ~ 21493435 (+) True LOC110523407
XM_021602086.2 mRNA downstream 358417 21518557 ~ 21521828 (+) True LOC110523409
TU428679 other upstream 271570 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 349628 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 511266 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1124281 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 3024764 18067443 ~ 18083365 (+) True arhgef28a
TU430417 other downstream 1012395 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1012395 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1343612 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1441970 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1782152 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile