RNA id: XM_021602088.2


Basic Information

Item Value
RNA id XM_021602088.2
length 2362
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110523411
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21578990 ~ 21597442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTAGCCCATCGTGAACGCGGGCGCGCGACCTTGTCCAGCTGTTTTTGCAACCAAGATGACGAGCAACACCAGGTACAAGAGCCGAGCACTCAGATCAGAGGATGGAAGAGAGGAGAAGGAGTATGTGGGGTTTGCCACCCTCCCCAACCAGGTCCACAGGAAGTCAGTCAAGAAGGGGTTTGACTTCACCCTCATGGTGGCAGgAGAGTCTGGTCTGGGTAAATCTACTCTGGTCAACAGCCTTTTCCTCACAGACCTGCACAAGGACAGGAAACTCCTCAATGCTGAGGAGCGTATCAGTCAGACAGTGGAGATCACTAAGCACACGGTGGACATAGAGGAAAAAGGAGTTAAACTGAAACTGACCATCGTAGACACACCAGGGTTTGGAGACGCAGTCAACAACACtgagtgttgGAGGCCAATCACAGATTACATTGACCAGCAGTTTGAGCAGTACTTCAGAGATGAGAGTGGACTGAACAGGAAGAATATCCAGGACAACAGAGTCCACTGCTGCCTCTACTTCATACCCCCCTTTGGACacggGCTTCGTCCAGTAGATATAGAGTTTATGAAGGCTCTGCAGGACAAGGTCAACGTGGTTCCTCTCATCTCTAAATCTGACTGCCTTACTCCCAACGAGATCAGGAAACTTAAAGACCGGgtccgTGAGGAGATAGATAAGTTTGGGATAAAGGTGTACCAGTTCCCAGACTGCGACTctgatgaggatgaggaggcCAAACAGAAGGACAGAGAACTCAAGgagagcACTCCGTTTGCTGTGATCGGCAGTAACATGGTGGTGGAGACCAGAGGTCAGAAGGTCAGAGGGAGACTCTACCCCTGGGGCATCGTAGAGGTGGAGAACCAGTCTCACTGTGACTTTGTGAAGCTGAGGACCATGCTGATCAGGACCCACATGCATGACCTGAAGGACATCACCTGTGACTGTCACTATGAGAACTACAGGGCTCATTGTATACACACCATGACCAGTAAAATGAATACAGATAACCGTGTGGAGAGCCCGATTCCCATCCTACCCTTGTCCACCCCAGACGTGGAGACAGAGAAACTCATCAAGATGAAGGACGAGGAGttgaggAGGATGCAGGAGATGCTTCAGAAGATGCAGCAGCAGATGCAGCATGAGCAAGACCTGTGAgccctgacccctaacctctcactcctgacctctcacctctctcttctcacctaaTGATATGTGGAACGACTAACACAGGGTCAATCACGTGCTGGCCAATCACACTGCAACCTCACTCCAACTGAAACAGTACAATTCTATCTGGATGTTCTGAAATATTACACTCTCTTCTCAATAATGTGCATCCCTAACAGAGACACTGGACACAGGGTAAAACCAACACCAAACACTCTGGATGGGCCACACACCCTACACTGGATAAACACTTTTAAACAGGGACAAACATTTTGTCAACGATTTGTTGGTGTTgtgaaaccccccccccaaaaacgaTGCTTTGTTGGATGCAGTCAGAAGCCAAGACTATAGCCAAGCTTTATAGCATTATAGTAGATTTGCACCTTAGATTGCAGTTGGTGTCCAAGCTTGTTTTTGTATTTAAGGGAAGTAGTTTGGTACTGAATTAGACTGTTTATGATTATTGTTGAATATGTATTTTGCACTCTACTGGCTCACACagttaaaatgtgtgtgtgtgcatgtgtgtgcgtgtgtgtgtgtatatttttgtgtgtgtgagataagGAGAGAGTGTCTCTAAGTCAGCATTGACATAGAGACAGGCCACAGTGTCATTTCCTGTCCAACAGAAGTTATGAGACAAACCAAAGTTTTGAGAGATTCTCAAATCTTCTTGTCCCTTTGCTCCGTTGACAGACTAGCTTCTGTCTCTGAGGGTTCTCTTATGGAACAAGGGCAACGTGTTGCAGCACCATCAATGTTCTGAGAGTCTACTGAAGATTCTAGGAGATAAACACATTAGATCAAATTTCACTTGAGAAGATTAGATTACATCCTGgaaaatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatatgtgtatgtgtgcaccTGTGTGTTAATGTGGTGTTGATTAGCCTGTATGATGGTCCATCCCGTTGTAGTACGTAACATAGATGAATAGATCTCTCAGCATGGTCAAGGTTGTGTCCACACAGACACGGTGATGTCTCACACTGGTGCATATCACTCAATAAAAGCCCACTGTTGTACCT

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16948 CDC12; cell division control protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU429116 lncRNA upstream 1406 21577204 ~ 21577584 (+) True G377523
TU429112 lncRNA upstream 6718 21571209 ~ 21572272 (+) True G377520
TU429108 lncRNA upstream 9776 21568954 ~ 21569214 (+) True G377517
TU429104 lncRNA upstream 13384 21565274 ~ 21565606 (+) True G377513
TU429096 lncRNA upstream 28429 21550337 ~ 21550561 (+) True G377505
TU429137 lncRNA downstream 14677 21612119 ~ 21612381 (+) True G377533
TU429139 lncRNA downstream 17636 21615078 ~ 21615793 (+) True G377535
TU429235 lncRNA downstream 168305 21765747 ~ 21769880 (+) False LOC110523419
TU429234 lncRNA downstream 168733 21766175 ~ 21769880 (+) True LOC110523419
TU429245 lncRNA downstream 182946 21780388 ~ 21780616 (+) True G377619
XM_021602084.2 mRNA upstream 44829 21527555 ~ 21534161 (+) True LOC110523408
XM_021602086.2 mRNA upstream 57162 21518557 ~ 21521828 (+) True LOC110523409
XM_036977038.1 mRNA upstream 85555 21478685 ~ 21493435 (+) False LOC110523407
XM_036977039.1 mRNA upstream 85555 21478700 ~ 21493435 (+) True LOC110523407
XM_021602081.2 mRNA upstream 101819 21473853 ~ 21477171 (+) True LOC110523406
XM_021602089.2 mRNA downstream 4591 21602033 ~ 21609081 (+) True LOC110523412
XM_036977040.1 mRNA downstream 18758 21616200 ~ 21622938 (+) False LOC110523413
XM_036977041.1 mRNA downstream 21480 21618922 ~ 21622938 (+) True LOC110523413
XM_021602091.2 mRNA downstream 36090 21633532 ~ 21635979 (+) True LOC110523414
XM_036977042.1 mRNA downstream 71979 21669421 ~ 21684268 (+) False LOC110523415
TU428818 other upstream 420071 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 742431 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 820489 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 982127 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1595142 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 575093 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 575093 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 906310 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1004668 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1344850 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile