RNA id: XM_021602089.2


Basic Information

Item Value
RNA id XM_021602089.2
length 5074
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110523412
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21602033 ~ 21609081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCACACCGAGAAAAACGGATAGAGACAATGATTTTTCTATGGGGTCATACGTTGACGGACAACAGAGAGTTAACATTTTGATGGATTAAACAGATTCGTAGTGCATTCCTTGAGCATTTAATCCATTTATGTGTGGCTGGGGCCTATTGGGATGCTTTGCACAACCTTGACCCCAGAACCCACATACCATGCACTTAGAGGAAGTTTCAACATCCATGTAAAAAGGTCAGAATTCACAGAGCATTCAGAATACTCATACAAAATACTCAGAATACACTCTCGATGTGGAAGTTCAACCAGCAAGGCTCCAGATGACTTCCTGTGTGATGTACACACAAAAAAAGAGTTGGCTCATCCACCCCTACTGTCTGACATCTCTCTGGGAgcactatgaaggaacactgGTTTCCTCTTTCCCCTGCCTTTCAGAGACTGCTGTTCATCCTGGTGttgctgtgtctctccctctcctgctctggGAGGACCTGGGCTCAGAGGAAACTACCCTGCGATGTCATCTCTCTCAACCAATCAGAGTCCTTTGACTGCTCGGACAGGAAGCTACTCCAGGTACCCCAGGATATCAGCCGGAATGCCACACGGCTCGACCTTTCCTCTAACAGGATCAAGAAACTCTCCGGCATCTCGTTCAGGAACCTCCGAAACCTGACTCGACTAGACCTTAGCAATAACTTCCACCCCCAGAAACATCCTCTGACAATAGAGAACCAAACATTCTCCATGCTGGATCAGCTCAAGGAACTGCTCCTTGATAGTAATGGTCTTTCTGCAGTGCCAAGTGCCCTTCCATCCAAGCTGCGGTTTTTGAGCCTGAAGTTCAACTGCATCAAAACCATCAGGCCAAACGACTTCATGCATGTCAGACTCTTAGAAACAATCCACTTAATTGGAAATTGCGACTACAAGAGTGTCTGTAATGGACTAGTCATCGGAAACAGAACTTTCTCCCACCTCACCAACCTTGCTAGTTTATCGCTGTCAAACAACAGACTGATAGGTGTCCCCCTgttcctccccccatccctccagcaGCTCAAACTCAAACAGAACACTATCACCTACATTCACCAGCATGATCTTAGTGGCCTCACTAGCCTGAGGCTTCTGGGCCTGTCAGGTAACTGCCCTGTGTGTTCTAACACCCCGTTTTTCTGCTCGCCCTGTAATACACCCAATGGGGCACTACAGATACACCCATATGCCTTCAGGAAGCTATCCAAGCTGCAGGAGCTGAGACTATCCGGAAACTCTCTAgatcacctacagtcctcctggTTTGAGAACCTCACCAACTTGCGCTACCTGTACCTTTCATTCAATCGTCTAGTTGGTGAGATAGCCAACGGGGACTTCCTCTCTGTGTTACCCGGCATAGAGGTGATGGACTTGTCTTACAATCACCCTGGACAATCTTCATATTCCCACAACTTGAAGCTCTCTAGGAACTTTTCCAACCTGACATCTCTGAAGACATTACACCTAGAAAACTATGTTTTTTCAACTCTTCACAAAAATGACTTGAACCCACTTTACAATTTATCTCACCTGTCTGTGCTCAATCTGGGAACTAACTTTATCTATCAGACAAACCCCTCATTGTTTGGCATGTTCCACAACTTGTCCAGTGTTGGCCTCTCTGAGAACAAATTTGCTTTCCTGTCTAAGAAAGAAGATGTTTTGTCAACATGTGGGTGTAGCTGTGGCTATGAGCTGAATAGAGACAGGTTTGGGCCTTACGTACACAAGGATCGACTCTTTCGTCAACATCTGCCTAACATTAAGCCAAAGTGTATTGCGTACGGTTCAGTGCTTGACCTTAGCAGAAACAACATCTTCCACATAAACCCTGATATGCTGCAaggcctggacaacacagctTGTCTCAACCTGTCATCTAACTCCATTGGAGACATGTTCAACGGTAGTGAGTTTGTACATTTCCCCAAACTTAAGTACTTGGATCTATCCCGGAATAAGATCTACCTGCACTATGAGCATGCATTCAGTGAGCTAACAGAACTGGAGGTGTTGGACCTGAGTCATAATAATCATTACTTTGTGGTGGCAGGGCTAAACCACAGCTTAGCATTCATGGAAAACCTGAGCTCTCTGAAGGTTTTGAACCTGAGCTGGAACGAGATCAGCACCCTCACTCATAACAACATCTCAAGCAGCTCCCTACAGGAGTTGGACTTCCAAGGCAACCGCCTAGACATCATGTGGAAAATATGCCAGAACTATGAACTTTTCAGAGCGCTCCAAAACCTGACTTCCCTGGATCTGTCATACAACAAGCTCCACCGTGTACCGCCTGAGGTCTACAAACACTTCCCCAAGACCCTGAGACGCCTGTCTCTGAGTAAAAACCGACTGAAGGTCTTTGACTGGGAGAGGCTCACACAACTACCGCATCTGGAGGAGCTGGACTTGAGTAAGAACAAACTGGAGCAGGTGGCCTGTGCTTTAACCAGTTCACTAAAGTTCCTGGACCTGAGCCATAACAGGATTTCCCAGCTAGCGCCTGGTTTCCTCAGGGGCGCCAGGAGCCTGTATGTGCTGGACCTCAGCTTCAACCTGTTGGAGCTCATCAACCAGACCACATTTGAGTCTGGAGCAGAGAACCACCTCCAGCAGCTGTCCCTACAGGGCAACCCGCTCCACTGCACCTGTGACCTGTTGGACTTCCATCTGTGGATGAGGAGCAATGAGGTGGAGCTCCCTCTGCTGGCTACTGAGGTGACATGCGACATGCCCGTGGAGAGGAGAGGCAAGTCTGTGTTGAGCTATGACATAGAGGAGTGTGTGAACGATGAAAACGCAATGGCCTTCTGCATCATCACGTCATTTCTCATCATTCTCACTCTGTTGGTATCTCTCACAGCACACCTGTTCTACTGGGATCTCTCCTATATTCTGGACTACTGTGGGGCCAAGATGAAGCATCACCGTCGCTTAGTGCCCACAGACTTTATCTACGACGCCTTTGTCATGTATGACACCGCAGACCCGCTGGCTTCTGATTGGGTATTAAACCATCTAAGGGTCGAGCTAGAGGAGCGTGGAGAGAGGGCACGATCCCTCTGCCTGGAGGAGCGTGATTGGTCACTGGGTATGCCTGTCATGGACAACCTGTCCAATAGCGTGCGGCAGAGCAGGAAGACAGTGTTTGTGCTGACGGACGGCTTCCTGTTGCGTGGTGTAGTCAAAATGGCTGCCCTGCTGGTGCAGCAGCGGctggtggaggagggggtggacTCCATGGTGCTGCTGTTACTGCAGCCCCAGGTCTTGCAACACTCACGCATCCTCCACCTGCGCAGGCGGCTCTGCAGGCGCAGTGTTCTGGAGTGGCCCGCGGATGCCAGTCCAGCTGCCCAGCGATGGTTCTGGCACCACCTGAAGAGAACCATTAGGAAAGATCAGATAGGCACTCACACATCCCTACACAGCACATACTTCACTGGGCGGTGAACCTACAGACATTAGAGGAACGTATGACTCTTACAAAGTAAAAGTTAAGGATATGGGTGACCTAAGACTACTCTATAATTTGGAATATTAAATGTGGAGAGAGCATAAAGACTGTGATGAAGGCAACATCGGCAATTTGCTGGCATCAAAGCACAGTGTGCGGTTCACCCGCACCCTCCCCAGGAGCGAGACTTCCCTGTGGCGCACCAAAGTTCCTAGTGCCCTTGAGGCGTGACATTTGACGTTCTCAATGTATTTTTATGTCTGATTTATTTCTAAAGTTAATATAAAGAGCTGAACATGTTGATATGACTCTCTGTAGGCCTATTGCATGTTTTATGGTTTTTCCTTTTCAGAGACGTTGTCCTAATCTGGTCGCCGGTCTGATGGCTGGTTGTTCCCATAATGTTGCAAGGTGATTTGGTTAGAAGAGAGTTGCGATGTTTTCCTTCTTTTGTTTCGGCCACCAGAGTGATGCTAATTAAATGTTGAGGATATTGTCATTTGAGTTTCGTCCGGGATGGTTTAAAGGAGAATGTTTTGCCATGTTCAAATGTAATTATTGTATTTTCCAAGCTCCTAGCTATACCTGCGTACAATACATGCAGTATTGTTGTTATCTTAGACTTTTTGACCTTTTACCTAGATGACTTATGCGGTTTCTTCTTTTAGATAATTGCATCTTATTGGATTTATTGTAATACATGTTGATTCATTTTAAATTGATACATGACTGCAGTCCTCATATTTCAGAGCGATACTTATTGACTGTTGATGCGGCTTATTGGTAAAAAATGAATTACACACATTGTATTCTTTtagatacacacactgataccTCTGCTTTAAACTGACTTCACTATTTATTACTAGACTATGACTGCAAGGATCAGCTCATGGTTCTAGCCTCTTAAACATGTCATTATGAAGCCAGATTAATTAGGTTAGAATTGCTCATACCCTAATTCTGTCATCCtcagcaaattggagtggatttTCATCCGATACAAGCATGCAACAGTGTGATTGAATATTTGTAATATTGTGATGAGGGCCAATGAATATGATGGGACACATACAATCATGCATGAAAAATGATAATAATTATGACCATATGATCATATAAGCCAGAAAGGCCTATCAGGTACATGCACTTATAAATAGAGGGTGAATTGTCCTGTTCCTGAAATCTGCttctgcattcatcccagtcatcaacaGACAGAGCATTGGGgaaggtgcatgtctgacatcagtgtgtgcacaattacaatgataatttaatatggtaaatgtaaaaatatatgaatAACATAAGTGTACTGTTGACacgtaggctatggtgtaatggaatgttttgccttgtgtgataggttttgtgggttataacaggttatgacacgttttgtcagctgttatgacatattatgtcATGGTTAGGATTATTGGGTGTCAAGTGTTACCCAATTTTTCGTAATTTCTCTCAGTCAagctgtgaatttcaaacacagattcaaccacaaagaccagggaggttttccaatgcatcgcaaagaagggcaccttaaaaacttacccaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU429120 lncRNA upstream 10328 21589495 ~ 21591705 (+) False G377527
TU429122 lncRNA upstream 10328 21589495 ~ 21591705 (+) False G377527
TU429124 lncRNA upstream 10328 21589495 ~ 21591705 (+) False G377527
TU429125 lncRNA upstream 10328 21589495 ~ 21591705 (+) False G377527
TU429126 lncRNA upstream 10328 21589495 ~ 21591705 (+) False G377527
TU429137 lncRNA downstream 3038 21612119 ~ 21612381 (+) True G377533
TU429139 lncRNA downstream 5997 21615078 ~ 21615793 (+) True G377535
TU429235 lncRNA downstream 156666 21765747 ~ 21769880 (+) False LOC110523419
TU429234 lncRNA downstream 157094 21766175 ~ 21769880 (+) True LOC110523419
TU429245 lncRNA downstream 171307 21780388 ~ 21780616 (+) True G377619
XM_021602088.2 mRNA upstream 4591 21578990 ~ 21597442 (+) True LOC110523411
XM_021602084.2 mRNA upstream 67872 21527555 ~ 21534161 (+) True LOC110523408
XM_021602086.2 mRNA upstream 80205 21518557 ~ 21521828 (+) True LOC110523409
XM_036977038.1 mRNA upstream 108598 21478685 ~ 21493435 (+) False LOC110523407
XM_036977039.1 mRNA upstream 108598 21478700 ~ 21493435 (+) True LOC110523407
XM_036977040.1 mRNA downstream 7119 21616200 ~ 21622938 (+) False LOC110523413
XM_036977041.1 mRNA downstream 9841 21618922 ~ 21622938 (+) True LOC110523413
XM_021602091.2 mRNA downstream 24451 21633532 ~ 21635979 (+) True LOC110523414
XM_036977042.1 mRNA downstream 60340 21669421 ~ 21684268 (+) False LOC110523415
XM_036977043.1 mRNA downstream 60340 21669421 ~ 21684268 (+) False LOC110523415
TU428818 other upstream 443114 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 765474 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 843532 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1005170 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1618185 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 563454 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 563454 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 894671 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 993029 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1333211 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile