RNA id: XM_036977040.1


Basic Information

Item Value
RNA id XM_036977040.1
length 2651
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110523413
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21616200 ~ 21622938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACTAGAAAGTGGAGGAGGAGACCATTAGAAATGAACGCACTGGGAGGATGACAGCTTTTAGCCGCTGCTGTAACCCTGAACCTCTGACATCCATATGAACCGTCAGCGAGAGGACCACTATCCCAGCCCGCAGGGCGCATCCTCTATCCTGAGCAAAAAGCGAGGGGTCGTGGGCGGAGGGTTCCTTATGATTTCTCAGTTTTCATAGACGTTCTCTAACACCATGGTGCTGGGAAAGGTGAAAACTTTAGCGGTCTACTTCGACTATCTGAACGACAACAACGTCCCCGTTTACTCCGGCGGGGATTCGGTCTCGGGGAGGGTGATAATCGAAGTCACCGGCGAGGTTCGCGTCAAAACGTTGAACATAACCGCCAGAGGCATAGCCAAGGTGCGGTGGACCGAGTCCCGGAACGCCGGAGCCAACACTGCCTACACTCAGAATTACACCGAGGAGGTGGAATACTTAAACCATAGCGACACGttaataggagaggagagagATGAGGACAGTACAGAGGAGACCCTCACTGTTCTCAACACAGGATTACACGAATTCGCCTTTAGCTTCCTGCTACCACAGAtGCCCCTGGCCACGTCGTTTGAAGGGAAGCATGGCAGTGTGAGGTACTGGGTGAGAGCAGAGCTCTACAGACCATGGCTGCTGCCTTTCAAAGTCAAGAAAGAGTTTACTGTGTTTGAACACATCGATATCAACACACCACTGCTGCTGGCCCCTCAAGCTGGCACCAAGGACAAGACCTTATGTTGTTGGTTCTGTGCCTCGGGACCCATCTCACTCAGCGccaagatagagaggaagggataCACGCCAggTGAGTCCATCCAGATCTTTGCAGAGGTGGAGAACTGTTCGTCCAGGGTGGTGGTGCCCAAGGCAGCGCTGAGCCAGACCCAGACCTACTTCGCCAAGGGAAAGGCCAGGCAGCTCCAGCAGCAGATGGCAGCCCTGCGTGGGGACACCCTACCCCAGGGGAAGAGCCAGAGCTGGGATGGAAAACTCCTCCACATACCCCCAGTGTCCCCATCCATCCTGGACTGTCCACTCATCAGAGTGGAGTACTCACTGGTGgtgtATGTGGACATCCCTGGGGGGTTGAACCTGTCTCTATCGTTGCCGTTGGTGATCGGGACCATCCCCCTCCATGCATTCACCAATCGAACAAGCAGCATCAGCAGCTACTGTAGTAGCATCAGCTGGCCAGAGAGACCTGAGGCTCCCCCCAGCTACAGTGACTTGGTGGTGACAGAGGAGCAGAGGTGGGGCTGTCTGGAGCGCtgtgaggggtcagaggtcaacgAAGAGGACCAGGGAACACTGCGCGCTTACATTACAGAGTTCAGATACCAGCCCCCGCCGCTCTACTCCgagGTTGACCCTAACCCAGAGCCGGGCTGTGGAGGTCAGGTGGTAAGGAGACCCGACCTCTGCCCCTCTCGCTGAGCACAACACTGACCTGCTCAGAGCAGACAGGCATCTACACCTACAGATGGATCCAACATGGCCGCTGCTATAGCCCCCTACTGGAGccagtcacctacagatggatccAACATGGATGCCGCTATAGCCCCCTACTGGAGccagtcacctacagatggatccAACATGGCCGCCGCTATAACGTCCTACTGGAGccagtcacctacagatggatccAACATGGCCGCCGCTATAACCCCCTACTGGGGCCAACATTGCGTCTCATCCTTAGTTTTCTCGGGTACATAGATCAACAGATGCAGGGATGTCAGCTCTGATAGACACTCTGTGGAGAGGCCAGGAGACGCCTCAGTCTGACCAGCATCACGGTTCTCTGCTGGTCAGAAATAATTGATTGTCCTTAGACCAAGCTTCTGGTACATATGACCATTACGTGGCACATCTAAGActagaaaggagaggagaagaagaaaatagATAATCCACTGTTGGACTGTTGGAAACAGTGGTCAGGATCTCCTCCAGCCTCAGAGTGAATTTTGCACATGCCTCTCACTGTTTTTCTACTTAACTTCCATATCTTTTCTTCCTCAACTGTCATATATGCTGGAACATGTCCGTTGTCTTCTCACCACCATTACTACTTAACTAGAAACAACACCGATCAAAGACTCTTTTAGAACAAAGTAACTAAGAAACAAATGAAAGGAAATGTTTTTAGAGAGGTGTTATTGTGTCTTGGGTTTCCTGAATGGGGAATGTGGTACATGGTGAAATGActagtgtgtgtgttcagacactGGTGTATCTGTGaagcactcactcactctctctgtctttcaggtGTCTTTCCTCACTAAACCCTCCATAGATACAGTACCCTACTAAGCACTTGTTTGATTGTAGTATGTGGACATATGACACCAGAAAGAAGCTCTGTATTTACATAAGAGGCAAAGAAACAGCCagatgtaaaaataaaataagaaaaaaatacatttgaaatgtttacagGTCAATTGTCCTTCAAAGTTGATCTTCACCTCCAAACAAAGTgcaatatatttttgtatttgtcGTTTTTCTGTTTGTGTAAGTGATGCCATTATAGCCATTACTGATCTGAATGCTATCATGATCTTCCTTTGTTTGAAATAAAGAAGCCGTTTTGTAGAAACTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU429139 lncRNA upstream 407 21615078 ~ 21615793 (+) True G377535
TU429137 lncRNA upstream 3819 21612119 ~ 21612381 (+) True G377533
TU429125 lncRNA upstream 24495 21589495 ~ 21591705 (+) False G377527
TU429235 lncRNA downstream 142809 21765747 ~ 21769880 (+) False LOC110523419
TU429234 lncRNA downstream 143237 21766175 ~ 21769880 (+) True LOC110523419
TU429245 lncRNA downstream 157450 21780388 ~ 21780616 (+) True G377619
TU429254 lncRNA downstream 167643 21790581 ~ 21790798 (+) True G377628
TU429255 lncRNA downstream 167940 21790878 ~ 21791428 (+) True G377629
XM_021602089.2 mRNA upstream 7119 21602033 ~ 21609081 (+) True LOC110523412
XM_021602088.2 mRNA upstream 18758 21578990 ~ 21597442 (+) True LOC110523411
XM_021602084.2 mRNA upstream 82039 21527555 ~ 21534161 (+) True LOC110523408
XM_021602086.2 mRNA upstream 94372 21518557 ~ 21521828 (+) True LOC110523409
XM_036977038.1 mRNA upstream 122765 21478685 ~ 21493435 (+) False LOC110523407
XM_021602091.2 mRNA downstream 10594 21633532 ~ 21635979 (+) True LOC110523414
XM_036977042.1 mRNA downstream 46483 21669421 ~ 21684268 (+) False LOC110523415
XM_036977043.1 mRNA downstream 46483 21669421 ~ 21684268 (+) False LOC110523415
XM_036977044.1 mRNA downstream 46503 21669441 ~ 21684268 (+) False LOC110523415
XM_036977045.1 mRNA downstream 46523 21669461 ~ 21684268 (+) True LOC110523415
TU428818 other upstream 457281 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 779641 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 857699 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1019337 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1632352 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 549597 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 549597 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 880814 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 979172 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1319354 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile