RNA id: XM_036977045.1


Basic Information

Item Value
RNA id XM_036977045.1
length 3389
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110523415
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21669421 ~ 21684268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagGACTTTTgggataggagagaaagagaagaagaacagGACTTTTgggataggagagaaagagaagaagaacaggACTTTTgggataggagagaaagagaagaagaacagGACTTTTgggataggagagaaagagaagaagaacagGTCTTTTgggataggagagaaagagaagaagagcagGACTTTTgggataggagagaaagagaagaagaacagGACTTTTGGGATAGAGAAGAAGAACAGGACTTttgggataggagagagagagaagaagaacaggACTTTTgggataggagagaaagagaagaagaacagGACTTTTgggataggagagaaagagaagaagaacagGACTTTTgggataggagagaaagagaagaagaacagGACTTTTGAGATaggagagaagatggggaggaaAAAGATCCAGATAGCACGGATTATGGATGAACGTAACAGACAGgtgACATTCACCAAGCGGAAGTTTGGCCTGATGAAGAAGGCGTATGAGCTGAGTGTTCTGTGTGACTGTGAGATCGCCCTCATCATCTTCAACAGCACCAATAAATTGTTCCAGTATGCCAGCACTGACATGGACAAGGTCCTGCTCAAATACACAGAGTACAACGAACCTCACGAGAGCAGGACTAACTCCGACATCGTGGAAACTCTGCGTAAGAAGGGTCTAAATGGTTGTGACAGTCCCGACATCGAGGCAGACGACTCTGCTGGTCAGAGCCCCGAGTCAGAGGACAAATACCGCAAAATCAATGAAGACATTGACCTCCTGATCAGCAGACAGAGACTCTGTcaGGCTCTCCCCCCGCCTAACTACGACATGGCTGGCTCCATCCAGGGCCAAAACAACAGTGGACTACTATATTCTCACCCCGGGGTGGGGGGATCCTTGTATAACCACAGTCTTCTGCCTCTTTGCCAAACACACTCTGGCCTGCAGAGGAACAGCATGTCGCCtggaccccaacacacacaccaaccccccAGTGCTGGAAACTCAGGAGGGATGATGGGTTCAGAGCTGTCTAACACCGTCTCCAACGCTGGTAGTGGTAACTATGGTAACCACCGTACCTCACCGGGGCTGTTATCTCCAGGAGGCATGGCCAACACTTCACCCCCGATGATTCAGGCCAAGACTTCGCCCCCGATGAACTCCATGACCCTGATTGGCAACCGCAAGCCGGACCTCCGCACGCTGCTACCCCCTGGCAACAAGAACAACATGCCCTCCATCAACCAGAGAATAAACCACTCCCAGTCTGCCCAGACATTGGCTACCCCCGCGGTCTCCATAGCAACACCTACTCTGCCTGGGCAGGGTATGGTAGGGTAcccctctgccctctccacctcatATGACACAGAGTACTCTCTGGGTGACCTGTCAGGGTTTGGTAACAGATCAGGATCTCTCCACCTGGGATCAGTAACAGGCTGGCAGCAACAACCGCTACAGAATATACAGCACTCAGCACTGGGACACATgggaaacattTGTCAGAACTCCAACCTTAACCTCCAGAATGTCCATCAGAACCTCTACATCAAGTCAGAGCCCACCTCCCCGCCCAGAGATCGAGGCATCGGATTTGTCAACGGAGGGATGGGGGGTGTGTCCCATGGCTACCCAACAAATCAGGGCCCGGCGGAGGCAGGGCTGTCTCCTGGCGACAGCCTATCCAGCTGTGGCAGCTCATACGATGGCAGTGATCGCGAGGATCACCGCGGAAATGACAACTTCCTGCTACACCCGATGTCCAATCAGGAGCGCCACAGCCCGTCCCTCAAACGAATGCGCCTATCAAAATGCTGGGCTACATGATAAGGCATGCCTCTTATTCacagagggggaggggcttgtgTAGAGTTACGTTTAGTGTTATTATGACTATTATTAAgcttgtgtccaaaatggcacccttttccctacatagtgctcttgccaaaagtagtgcactttatagggaatagggtgcgatttcaGATTTGCCCTATATTCTTCTTGTGCAGAGTGAGAGTGTTCCACTATAACAGGGACATTATATACAGGAGTGTGGAGGGAATATAACAGTGACAGACTgggtctgaaatggaaccctattgcCCACGTAGTGCACTAACTATGGGGAAATAGGGAGTGATTTGAGACAACCAgtgatattatacaggagtgagGGTGGATATGGTGTGGAGGAGTCAGTGTGGGAGGTCTGTTGCCTGTGTTGTGTatttgtgggagagagagggaatcagTAAATTAATATGTACACTATATGTAAACTAACTAACACAGGTTGAAGAAGTCTGGCACTCTGTATGGATAAGATACTGGTGAGTCACTAATATACTAGGAGACACAAGGACAGGCACTGTGAGTGGACacatcagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgcgcgtgtgcgtgtgtgcgcgcgtgtgcgtgcgtgctcacTCGCTACCTAGGCTCTGATGTCCCAATCTGCAGCTGGCTGACTAGCAGACAGAGTGAGTGTTCACTACAACCCATTCATGTTGCCGGTTCAACATAtttatgtgtatatataaatgAAGAACAAGGGAGGAtttggcagacagagagagaaaatgaaagggatcgagagatagacagagaagggagggaaAGACTGATGGAGAAAGGAAGAGAACGATAGAAGGAGACAGAAAAAGGACAACgatagggggagagggaagaaggagagggtGAAAGCCATTATGCAACAGGTTGCACAAAGCTGGAactatagaataatagtgattgATCGATCAAGAAGTCATTCTAATATTCTAATTATACAGCTGGAACCCTGGACAACTACAATGTCTCACTTGAAATGAAGGCGCCTAGGAATTGTAGTTCAACTCAGAATACTTTTTAAGAGCCATATGCTAACAAATACTATCTGAGTCATATACACTACAGTGCTACTCAttcagatggagagaaagagagactgtttTACCAGCCAGATAGACAAAGCCacagggaggaggtggtgtgagTTAAAACAGAACTCCCAAAGCCATATTATTATAAAATGGGAAGTCAAATCTTTGCTGCACAAACAAGTGGTTTCTCTTTATAGTATTCTGAAAATATTTAGAAAATCAacagtatgaaataacacatggaatcatgtagtaaccaaaaaagtgttaaacaaatcaaaatcgattttatatttgagattcttcaaatagccaccctctcaaccagctttatgaggtagtcacctg

Function

GO: NA

KEGG:

id description
K09260 MEF2A; MADS-box transcription enhancer factor 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU429139 lncRNA upstream 53668 21615078 ~ 21615793 (+) True G377535
TU429137 lncRNA upstream 57080 21612119 ~ 21612381 (+) True G377533
TU429127 lncRNA upstream 77756 21589495 ~ 21591705 (+) False G377527
TU429235 lncRNA downstream 81479 21765747 ~ 21769880 (+) False LOC110523419
TU429234 lncRNA downstream 81907 21766175 ~ 21769880 (+) True LOC110523419
TU429245 lncRNA downstream 96120 21780388 ~ 21780616 (+) True G377619
TU429254 lncRNA downstream 106313 21790581 ~ 21790798 (+) True G377628
TU429255 lncRNA downstream 106610 21790878 ~ 21791428 (+) True G377629
XM_021602091.2 mRNA upstream 33482 21633532 ~ 21635979 (+) True LOC110523414
XM_036977040.1 mRNA upstream 46523 21616200 ~ 21622938 (+) False LOC110523413
XM_036977041.1 mRNA upstream 46523 21618922 ~ 21622938 (+) True LOC110523413
XM_021602089.2 mRNA upstream 60380 21602033 ~ 21609081 (+) True LOC110523412
XM_021602088.2 mRNA upstream 72019 21578990 ~ 21597442 (+) True LOC110523411
LOC110522823 mRNA downstream 4900 21689168 ~ 21695622 (+) True LOC110522823
XR_005051680.1 mRNA downstream 81437 21765705 ~ 21769900 (+) False LOC110523419
XM_036977047.1 mRNA downstream 81441 21765709 ~ 21769900 (+) False LOC110523419
XM_036977046.1 mRNA downstream 81496 21765764 ~ 21769900 (+) False LOC110523419
XM_036977048.1 mRNA downstream 114072 21798340 ~ 21808924 (+) True LOC110523420
TU428818 other upstream 510542 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 832902 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 910960 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1072598 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1685613 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 488267 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 488267 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 819484 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 917842 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1258024 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile