RNA id: TU429234


Basic Information

Item Value
RNA id TU429234
length 1219
lncRNA type sense_over
GC content 0.46
exon number 4
gene id LOC110523419
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21765705 ~ 21769900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACGGGAATTGTGAGGTGgcagctggctagttagcggACCTACCTCCGACATGTCTGCCATATTTAACTTCCAGAGCCTGCTGACAGTGATCCTATTGCTCATCTGTACCTGTGCCTATCTCAGAGCCATGGCGCCCAGTCTCCTGGACAAGAACAAGACCGGCCTCTTGGGTATCTTCTGGAAATGTGCTAGAATAGGTGAGAGGAAGAGTCCGTACGTGGCGGTTTGTTGTGTCGTCATGgccctctccatcctcttctccGACTAGCAACACACCCGGCCCCGCCACGCCCTGCACACTGGGATTCCTAGTGGCAGAATAAAGAAGACTGAGTCATTCAGGAGAAGCAGCAGCAGTATCTCCACTCTCACAGAGGAGGCCTGTATGGGACACAGCTGTGTTTCTCTTCGGTGGGGTGCCGCGGTTAATGTTCTGTAGTAACACATAGGGACCTACTCTAGAGAAGAACAAGCCTCCCCCatcactccctccatccttctgttGGCCATTTCACAGTTTAGCCTCAATCAGTTGTTAACCAACGGCCTCCTGGATCTCTCTGTAAACACTGACAGTTGTTGTCCTCTGATATTAACCGTAGGGATTGCCCCATGTTTTTCACTGCACTCTGATTTGTAATGAGGTCCATATGGTAGATGGACAGATTTTGGGGAggagtgttttgttttgtgttttgacTGTTTTTCTGTACATAAGACTCCATTGATTAGACTATTGGACAGTTGTGCCTTTCTGTAACCCAGGATTCAGTTTTTTCATTGATCACTGGGGTGGCTAAATTTCAGAAACATTAACCCTGTGTTCAACTTACTACTTTTCTGAATGAGAATTTATTTGAttagtgttaactagctaactGATTGATCCTGTTTGGTGAAACGTGACCCTGTGGTAGTGTTCCATgttgtctttttttttcttccatgtTGTCTTTTTTTTCTTGCAGTCGTGAGATCTGATGGTCTGTGCAGCGCGACAGGCCGTGAGGCTGATAggtaagcttattaaagatcagtgacactatcaagaacagtgtgcggtttcctttttcccTCATCTTGTCTAATTGTTACCATACACCTGCAAAaaaagattgctcagatgtgcgagtgccttttgactGAAATCAATAGGACCTGGAACATGCCCATTATGACAGCACTACAGCCAAACTGTCATTAAATCTGAAATAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU429139 lncRNA upstream 150382 21615078 ~ 21615793 (+) True G377535
TU429137 lncRNA upstream 153794 21612119 ~ 21612381 (+) True G377533
TU429127 lncRNA upstream 174470 21589495 ~ 21591705 (+) False G377527
TU429245 lncRNA downstream 10508 21780388 ~ 21780616 (+) True G377619
TU429254 lncRNA downstream 20701 21790581 ~ 21790798 (+) True G377628
TU429255 lncRNA downstream 20998 21790878 ~ 21791428 (+) True G377629
TU429256 lncRNA downstream 21622 21791502 ~ 21791809 (+) True G377630
TU429270 lncRNA downstream 51702 21821582 ~ 21822850 (+) True LOC110523421
LOC110522823 mRNA upstream 70553 21689168 ~ 21695622 (+) True LOC110522823
XM_036977042.1 mRNA upstream 81907 21669421 ~ 21684268 (+) False LOC110523415
XM_036977048.1 mRNA downstream 28460 21798340 ~ 21808924 (+) True LOC110523420
XM_036977050.1 mRNA downstream 46898 21816778 ~ 21822877 (+) False LOC110523421
XM_036977049.1 mRNA downstream 46905 21816785 ~ 21822877 (+) False LOC110523421
XM_021602099.2 mRNA downstream 72188 21842068 ~ 21847237 (+) True LOC110523423
XM_021602100.2 mRNA downstream 184203 21954083 ~ 21958510 (+) True LOC110523424
TU428818 other upstream 607256 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 929616 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1007674 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1169312 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1782327 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 402655 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 402655 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 733872 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 832230 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1172412 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile