RNA id: XM_021602100.2


Basic Information

Item Value
RNA id XM_021602100.2
length 2418
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110523424
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21954083 ~ 21958510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTTCATTGGTGTTGACCTGGAGACACGTCAGTCCCTCGTGACTCTGCCAGCAATAGCGTAACAAAAGGCGGATGTTCTTAGCAAGCTAGCTGACCTGGGACAAGGTTTAATGAAGCTGGTTAACGATAGCTAGGTGGTCAAGATTTTCACGTTTCAAAAAATAGACATAGATCCCGGCAAACTGACATAAGGACAACATTTTTGATTTTGTCCCTGCGCCGTATTATCGCCGTTTGATTGTTGAACAGCATAATTACGTTAGTCCCAGGGAAGGATGGCCTCCCGTAAGAAGGTGCTGCTGAAGGTGATCATCCTCGGAGACTCTGGGGTAGGGAAGACATCTCTGATGAACCAGTATGTAAATAAGAGGTTCAGTAACCAATACAAGGCCACTATAGGAGCTGACTTCCTCACCAAGGAGGTGATGGTGGATGACAGGCTGGTCACCATGCAGATCTGGGACACGGCAGGGCAGGAGCGGTTTCAATCTCTGGGTGTGGCGTTCTACCGTGGGGCTGACTGCTGTGTGCTGGTCTATGATGTCACGGCGCCCAACACCTTTAAGACTCTGGACAGTTGGAGGGATGAGTTCCTGATCCAGGCCAGCCCCAGAGACCCAGATAACTTCCCCTTTGTGGTGCTAGGCAACAAGATTGACCTCGAGAACAGACAGGTGACAACAAAGCGTGCCCAGGCCTGGTGTGCCAGTAAGAACAACATCCCCTACTTTGAGACCAGTGCCAAGGAGGCCATCAACGTAGACCAAGCATTCCAGACCATCGCCCGCAACGCcctcaaacaggagtctgaggTAGAGACGTATGACTTTCCAGACCAGATCAAACTGAGAGACGACCGGTCCTCCTCCTCCAGCGACGGCTGCTCCTGCTGAGACCAACGTTGGACGGACgttggatggaggagaggacatgggTGCATCGCAATAGTGCTCCTTGTCTCCTTTTCGTCCTCTGCACTGGTGTGAAAGATTGGGACAGGTGAAGCCATCTCCCCACATCCTTCCTGTGTTTTCACATCggtgcagatgaaggggaggaagccactttagactattgagatgcaccccatgAAGAGAGGCGGGGACCCCCCGTCTCTGCCCTCCCTTCCTCAGTCAGCTACTGAAGATTCCAGATGAAaagaaagaaaacacatttttcttAACTCACTGTCTCCCGTGGTGACctgacaggaaggagaggagaatccCCCATTTGCACAGCATCACTTTTTAATAAGATAGAAGAACCGGTGATACTATGGAAAATACAATCATGATGCTCCTATTATAATCATTTCTAATAATGTTGTCATGTCTTTTAGTTCTTGTCGTTTTAATTGTTTCATCCTTTTATACTGAGGTATAGactatttgtctgtttgtttgtggTCAAAGTAGAAGTTGTCATTAactactgatctaggatcagattactcttggccaaacctaaccttaaccattagagggATTGGTTAGGAGCAACTCTTACTTACTCTTCTCGCTCTGTGCCTTTCATCTCATGACAAGTATTACTGCAGCAGATCTGTCATATTaatctatatatacagtatatgtggtgTTTTTCTGCCTTTCAGCAGTCCTTATTTTGCCAAACTGTCAACCCCTAGACCCTTAGAAAAATGTAAATTTGAATCTGTTGTATTTGATAAGTGTCTGTTTTTAAACAGTTGTGTAGAGGGTGCTAAACTAACCAGATGCAGTGAAGGTAACTGTGTGCAGTCAAAATATGACGGTGTGCACTGACATTCTCTCGACCCAACAGCAACATCGGTTCTGTTCTTTTATACTGGTTAGTTCAGTACATTTCTTATCTTGTTATCCATACTACACAACTGTATCCCTGTAGAGGCTGGTCATACATTTTATGGAATGAAGACATGAGATGAGCAGTCACTATGGGCCTGTCTCAAGTTTAAACCCTAGCCCCCTCAAGGCTCCTAATAGATCAAAAATGATCTGATTTGTGTAAGCAGTGTGGTTCTAGTGAAATAGTAGTTGGCCATATTGCTTACACTACTTCTCAGGTCTACCAGGAGGCTATCTAGAAGTGTCTAGGGAAAGAGGGGAGGGTTTGGGACTGGACCCCATGTCCTCTGCCCTAACAGTGGGCCGTGCCCCTCTTTGGTCCTACTGATCACCTCTCTCCTAGTTTTTTTTCTATTCCATTGTCTTAAATCTGCCTTCCTATTCTACACCATCCACTAGTGTTGCTGTGTGTTCTAGTAACAGAAATGAATTGACTCTTTCATGCCAACAACCAATGAGCAAAAATCCTTAGTCATCTATCTACGTGAACATTTTCGCACAACTCCTTCAACTGTCATATTTTGTTGCATATCTCTTCGCTGTAAAACATAAATATTTACTTTATGGAAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07897 RAB7A; Ras-related protein Rab-7A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430204 lncRNA upstream 1082 21952735 ~ 21953001 (+) True G378478
TU430202 lncRNA upstream 4747 21949085 ~ 21949336 (+) True G378476
TU430200 lncRNA upstream 6456 21947416 ~ 21947627 (+) True G378474
TU430199 lncRNA upstream 7676 21946068 ~ 21946407 (+) True G378473
TU430198 lncRNA upstream 8115 21945713 ~ 21945968 (+) True G378472
TU430211 lncRNA downstream 14078 21972588 ~ 21974098 (+) True G378485
TU430218 lncRNA downstream 22421 21980931 ~ 21981344 (+) True G378489
TU430212 lncRNA downstream 24002 21982512 ~ 21983631 (+) False G378486
TU430214 lncRNA downstream 24002 21982512 ~ 21984025 (+) False G378486
TU430215 lncRNA downstream 24002 21982512 ~ 22005024 (+) True G378486
XM_021602099.2 mRNA upstream 106846 21842068 ~ 21847237 (+) True LOC110523423
XM_036977050.1 mRNA upstream 131206 21816778 ~ 21822877 (+) False LOC110523421
XM_036977049.1 mRNA upstream 131206 21816785 ~ 21822877 (+) False LOC110523421
XM_036977048.1 mRNA upstream 145159 21798340 ~ 21808924 (+) True LOC110523420
XM_036977047.1 mRNA upstream 184183 21765709 ~ 21769900 (+) False LOC110523419
LOC110522824 mRNA downstream 2965 21961475 ~ 21990926 (+) True LOC110522824
NM_001124290.1 mRNA downstream 39146 21997656 ~ 22000508 (+) True LOC100135946
XM_021602110.2 mRNA downstream 87461 22045971 ~ 22053104 (+) True LOC110523429
XM_036977053.1 mRNA downstream 231858 22190368 ~ 22221369 (+) False LOC110523432
XM_021602112.2 mRNA downstream 231859 22190369 ~ 22221369 (+) False LOC110523432
TU428818 other upstream 795164 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1117524 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1195582 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1357220 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1970235 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 214025 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 214025 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 545242 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 643600 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 983782 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile