RNA id: XM_021602139.2


Basic Information

Item Value
RNA id XM_021602139.2
length 2442
RNA type mRNA
GC content 0.50
exon number 5
gene id lhfpl2a
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22942205 ~ 23007315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGTCACTAGCTCCCAAATGTAGGCATGCTGGTCTGGAGAAAAAGGCTCGCAGCTCTGTTATCCGTGGTCACAGAGAGCGTGGGGGAGGAAGACACTTGGACCAAGGAGTCTTGCGGGTAGAAGAAACACACCGGCGTTATCCAAAAGGAAAACTTCTAACCCAAAGACAGCGGTTTTCAAAAAAATCTTTAGGCTAGTTGGATTTTTTATTGGAAAGCGAGCATATTGAACGCCGGACGTTTTGCACAACTTGGAAAACCTATTCATCCTGAAGAGAAGACTTGTGTAACCAGGCCTGAAGGGGACCGTTTGTCTCGGACTCTTCTTCAAGAATCCACACAAAAGGTGTGTAGTTGGTGAGAAGCCAGCCGGCTGGCCTTGGAGACACTCCTTCACTACGATGTAGAGGCCAGaagagcgagaacgagagagcgagataaagacgaaagagagagagagtgtgtgaacaACAGACACTCCGGCTGGAAGAGAAACTGAAAGCGGGACCCCATCCTTCACCCTTTCCCCTCTTCCTGAAGAACCGGAGGACTTGAACCTTCACCTTTGACCCCACCTGTGTAACCACTGGGCGGGAAAAGACATCACCAGGAACACTTCAGAACCACTTcaaacatcatcatcaccatgtgCCACGTGATCGTGACCTGTCGCTCCATGCTGTGGACTCTACTCAGCATCGTGGTCGCCTTCGGAGAGCTCATCGCCTTCATGAGCACCGATTGGCTGGTGGGCTTCCCCCGGACACCGGACGCCGTCTTCGGCCCTCATGGTGCCACAGCGGCTGGCGAGGCCTACCGGCCCACCCTGGGCATCTACGGCCGCTGCATCAAGCTGCCCCACTTGCGGCGCGGTGTGCTGTGTGGGCCGTACGCCGTGCACTTTGGGGAGATCGCCAGCGGGTTCTGGCAGGCGGCGGCCATCTTCCTGGCGGCGGGCATCCTGCTGCTGTGTGCCGTGGCCTTCATCTCTGTCTTCACCATGTGCTtccagagcatcatgaagaagagCATCTTCAACGTGTGTGGACTGCTGCAGGCCATCGCAGGTCTGTTTCTGATCCTGGGTCTGATGCTGTACCCTGCAGGCTGGGGTTCAGACAAGGTGCAGCTGTACTGTGGTCAGGATGCGGCTCCCTACCAGGCAGGGCTGTGTACCATGGGCTGGGCCTTCTACACAGCCATGGGAGGCACCGTGCTCACCTTCATCTGCGCTGTGTTCTCAGCCCAGGCCGAGATCGCCACGTCCTCAGACAAGGTGCAGGAGGAGATCGAGGAAGGCAAGAGCCTAATCTGCCTGCTCTGAGATGGAccaggaggggagaaggagaggaatgtCAAGTCCCACGCCCCTCTTCTCCACTCTGGGTTCCAGCTGTCAATCAAACGGAAGCCCCCATGTTGTTTACCACTAAGACGGACTCTTTGACCTTTGACCctgtattgttgttattgttcatGTGGGAGAAATCTACAGTGCCAAGCTTTTCACAAACCTGTGTTTCAATGTATTTCCTCTCTCCGACACCAgaggtgctgtctgtctgtgttctgtaTGTTGTTATTTCTAATGTGTGCCAGTACCAGCTACCCTGACACCAGTATGTGTGTATTGTAAATaagtgtgtatatactgtacatagtgatgatgatgatgatgatgatgatgatgatgatgatctgaGAATGGTGGTCCTCAGCTCTGTTCAGGCTGTGTTTTAAATGAGTGTCACTCTTGCTTTGAATACTGGTGTGATGAGGACAACACCTAAAGACCAGCCTTCCTGGTGCTAATCTTCTGTTGTACCATAAAACGCCAGGTAGAAGTTGCCCCTAACTACAGATCTAGTATCACATTACCCAACCCCAAATCATAACCTGAACCACGAGAAGGATAAAATAGCATCGTATACCAGACCCGCAGTTAGAGGTAACTTCTACCAGCTCCAGCTTAAACCAGGTGTGAGTAACTCTACAAGGGAACCACTACTCAGTCAAGTAAACTACTCACAGACATGGCCTTAGTTTAGCATGGAATCATGATGTCCGTAAAGCTTACAGAATGTACTGTCAATTGAAATGACCAATGTATGTCTTCTTGGACCCTTGAAATGTATTGATGGGACGGACACCTACACAGGCCACGGTTACACACGGACTGCATGATCTAGCTAAGAAAGACTTGGACAATTTGGTCAACGATACACACAAGTATTCCTATTAGTGTCTTCCTTTTAGTGTCTTGTTTAAGGAAGGACTCCTATTCCTGCAACACCAAGGCAGGTCAGTTATTCCTACAACACCAGCCACAGTGCTGGAGAGAAACTGTTGAGACTTGTGTTGTTGCGTCATCATCTGACTATCACAGctccccagtctgtctctctgccaaaccaataaaaacagaaagaaaaacacAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430835 lncRNA upstream 78964 22856069 ~ 22863242 (+) False G379021
TU430837 lncRNA upstream 78964 22856069 ~ 22863242 (+) False G379021
TU430836 lncRNA upstream 78964 22856103 ~ 22863242 (+) True G379021
TU430718 lncRNA upstream 140228 22799703 ~ 22801978 (+) True G378912
TU430769 lncRNA upstream 191401 22750582 ~ 22750805 (+) True G378962
TU430939 lncRNA downstream 761 23008076 ~ 23008349 (+) True G379100
TU430941 lncRNA downstream 2046 23009361 ~ 23009598 (+) True G379102
TU430943 lncRNA downstream 3588 23010903 ~ 23011258 (+) True G379104
TU430944 lncRNA downstream 6163 23013478 ~ 23013715 (+) True G379105
TU430950 lncRNA downstream 13325 23020640 ~ 23020849 (+) True G379111
XM_021602137.2 mRNA upstream 38771 22874170 ~ 22903435 (+) True dmgdh
XM_036977064.1 mRNA upstream 142785 22768665 ~ 22799421 (+) True LOC110523445
XM_036977053.1 mRNA upstream 720837 22190368 ~ 22221369 (+) False LOC110523432
XM_036977069.1 mRNA downstream 58339 23065654 ~ 23158020 (+) False LOC110523451
XM_036977070.1 mRNA downstream 58339 23065654 ~ 23158020 (+) False LOC110523451
XM_036977073.1 mRNA downstream 58339 23065654 ~ 23158020 (+) False LOC110523451
XM_036977071.1 mRNA downstream 67435 23074750 ~ 23158020 (+) False LOC110523451
XM_036977072.1 mRNA downstream 67435 23074750 ~ 23158020 (+) False LOC110523451
TU430672 other upstream 312537 22602110 ~ 22629669 (+) True G378868
TU430626 other upstream 435936 22503752 ~ 22506270 (+) True G378832
TU430417 other upstream 710286 22172535 ~ 22231920 (+) False G378660
TU430418 other upstream 710286 22172535 ~ 22231920 (+) True G378660
TU428818 other upstream 1783287 21108169 ~ 21158919 (+) False LOC110523400
TU432291 other downstream 616649 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 626706 23634021 ~ 23637091 (+) True LOC110522832
TU432349 other downstream 733119 23740434 ~ 23741459 (+) True G380340
TU432379 other downstream 831209 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other downstream 831209 23838524 ~ 23842716 (+) False LOC110523468

Expression Profile