RNA id: XM_036977071.1


Basic Information

Item Value
RNA id XM_036977071.1
length 7307
RNA type mRNA
GC content 0.50
exon number 27
gene id LOC110523451
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23065654 ~ 23158020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagacagtgagaaagagagagagagctggggagagagagagagagagctggggggagagagacagtgagagagagagagagagcaagatcgAGATGACAGGCAGGAAACGCCTGGAGTCACAGgactgaaataaagcagaacagaGTATAACTGGATGACCAGGGGGAGCTGTCTGTGCCAGGGAGAGGGCCAGAGGTTTAGCCAGCTGCAAGGgcatcctgtgtctcctcttacctactgacagaagtggagaaagaagagtgaggaagactgacagagagacgagaggagagcaACAGACAGGCCTGTAGAAGCTGTAGCAGTATGAATGGTCACCGGGGTTTCTCTGTGCTGCGTTCTGAGGCAGCAGGGGCTGTGAGGACAGCTCTGGTATCTGCTGAGAACCTTCAGCTCACCTTAAAGACTGAACTCAGCCAGGAGGAGCAGCACctcacaccccacacacacaccaatggagGCCCCGATGAGACACACACCAAAGGGTACTGTACAGAAGTgAATGAAGACCTTAAAGAGATGCTTGAGAGCAACAAGGAGTCGCTTAAACTGGAGGCCATGAAGAGGGTTGTTGGGCTGATCGCAAAGGGGAAGAATGCCTCTGAGCTGTTCCCAGCAGTGGTGAAGAACGTGGCTAGTAAGAATATAGAGTTGAAGAAGTTGGTGTATGTGTACCTGGTGAGGTATGCAGAGGAGCAGCAGGACCTGGCTCTACTGTCCATCAGCACCTTTCAGAGGGCCCTCAAggACCCTAACCAGCTGATCAGAGCCAGTGCTCTCAGGGTTCTGTCCAGTATCAGAGTCCCAATCATCGTTCCCATCATGATGCTGGCCATCAAGGAGGCTGCCTCCGACATGTCCCCTTACGTCAGGAAAACATCCGCCCACGCCATCCAGAAACTCTACAGCCTGGACCAGGATCAGAAGGAGCTCCTGATAGAAGTCATTGAGAAACTGCTGAAGGACAAAAGCACATTGGTAGCAGGCAGCGTTGTGATGGCCTTTGAGGAGGTGTGTCCAGACCGTATTGACCTGATCCATAAGAACTACCGTAAACTCTGCAACCTGCTAGTGGACGTGGAGGAGTGGGGTCAGGTGGTCATCATCTCCATGTTGACACGCTACGCCAGGACACAGTTCACCAACCCCTGGAAagaggaaggTGTGTTTGATGAGCGCAATGAGAGGGCGTTCTATGAGTCTGATGAGGAAAAGACTAGAGATGAGACGGAGGCCAAGCCCTACATGATGGACCCTGACCACAGACTGCTGCTCAGGAACACCAAGCCTCTACTACAGAGCAGAAACACTGCCGTGGTGATGTCTGTAGCCCAGCTGTACTGGCACCTGGCTCCTAAAAACGAGGTCAGCATCATCACCAAATCTCTGGTCAGACTGCTCAGAAGCCACAGaGAGGTGCAATACATTGTGTTACAGAACATTGCCACCATGTCCATCCAGAGAAAGGGCATGTTTGAACCTTACATGAAGAGTTTTTATGTGAGATCCACAGATGCCACTCACATCAAATCACTCAAGCTGGAGATCTTGACCAGCCTGGCCAACGAAGCCAACATCTCCACTATCCTTAGAGAGTTCCAGACCTATGTGAAGAGCCAGGACAAGCAGTTTGCTGCCGGTACCATCCAGGCCATAGGCAGGTGTGCCACCAACATCTCTGAGGTCACAGACACCTGCCTCAATGGACTGGTGCTGCTGCTCTCCAACAGAGACGAGACGGTGGTCGCGGAGAGTGTGGTGGTGATCAGGAAGCTGCTCCAGATCCAGCCCACCCAGCACAGTGATATCATCAAACACATGGCCCAACTCTTTGACAACATCACTGTGCCGATGGCGCGGGCCAGCATCCTGTGGCTAATGGGAGAGTATTGTGAGAGGGTCCCTAAGATCGCCCCTGACGTCCTCCGCAAGATGGCCAAGAGCTTCACCTCCGAGGAGGACATCGTCAAGCTCCAGACTGTCAACCTGGCTGCCAAACTCTACCTCACCAACTCCAAACAGACTAAGCTGTTGACCCAGTACATTCTGAACCTGGGGAAATATGACCAGAACTATGACATCAGAGACCGCACGCGATTCATCCGCCAGCTCATTGTGCCCAATGACAAGAACGGAGCGCTCAGCAAGTACGCCCACCGCATTCTGCTGGCGCCCAAACCAGCACCTGTCCTCGAGTCTGCCTACAAAGacCGCGATCGTTACCAGTTGGGAACCCTGTCCCACACCATCAACACCAAAGCCAGTGGCTACCTGGAGCTCTCTGATTGGCCCGCCGTGGCTCCTGACCAATCAGTGAGGAATGTGGAGGTAATTGAGCCGGTGAAGGAGTGGGCTCCATCTCTAGGGAAGACTGGGAAATCCAAGCCTGCCAAATCATCAGATGACAAGTTCTACTCTGactcaggagaggaggaggaggagaagggatcaGGGAGCAGTAGCAGTGAggatggcagtagtagtagtagtgaagAGTCAGGCAGCGATGCAGAGAGCCATGTCCAGAAGAAcagcagtcagagcagtgagGAGTCAGACAAGTCCTCCAGCCAATCAGAGAAGAGTTCCAGTGAATCTGACTCTGAAAAGAAGGAGAGGAAAACTAAGACCCCACTACAGAAGAAGACAGTCAAACCAACAGCCAAAGACAGTGATTCGGATGAGAATGGGAACATTGCTAAAGAAGCCAACAGTTCGTCTGCAGAAGAGAGCTACTCTGATTCTGATTCTGATTCAGAATCAGACTCTGACACCCACACAGACTCTGACTCAGGCACCGAACACAAGAAGGAGACCAAGTCTAAAGCCAAACCCAAGGTGGAGGTGAAGTCAACGAAGGAGGTGTCTCTGTTGGATCTGGGTGACTtCACTCCTGCACCAGTGACCCAGCACAAgtcttctgtcctctctcctagCTTGctaggagacctggagggcctgTCACTCTCCAATGTCTCCTCCATCATCCagGTGAGCGGTCCAGCGTTTGTCCCAGAGAAGAGCCATGACCTGCTGCACCGTATGACAGGTAAAGGTCTGTCAGCCCAGTACCAGTTCCCCAGACAGCCCTGTCTCTACCAGCCCACCATGGTCTCAGTCCAGATCAGCCTGACCAACACCACAGACCATCCTCTGGAACAGATCCACATTGGAGACAGGAGCCCCACAGGACTCAACATGCACTGCTTCAATACTATAGAGTGTCTGGAGCCAGAGGCCTCAGTGACTGTTTTCATGGGCATCGACTTCAACGACTCAACACAAGCAGCCAACTTCCAGCTGTGTACGAAGGAGGACCATTTCAGTGTGTCCATCCAGCCTGCCATAGGGGAACTCCTCCTGCCCATCACCATGACCGAACTGGACTTCCGCAAGGAGAAAGGTAAACTTCTGGGCATGAACGAGAGCTCGGCAACCATCACCATGGCAGCAGAGAACATGACCAGCCAACCAATCAGCAGACCAGTGGCAACCGTGGCCAACCTGGGAGTGGTTCCATCCAGTCAAGGCAACgtccacagGTTTGCTGGTAAGACGGCCAGTAGTAGAGCTGTGGTGCTGGTGACGGTGGAGCTGAGGGAGTCGTCTACAGCCCTGATCACCATCAACACAGAAAAGAGTGTCATGGGCTCCATGCTGCTCCGAGACCTTAAACTGGCCCTGGCCCAGGCCTAGAGTCTACAGCGCCCCCTAGCGCTAGTCCTCCAACACAGGGAGAAATGCACAGCTACCTTGGAGAGATCTCATGcatgcaaaaacacacatacactcacacatacacaacatTTATTTCTGTCTCCCAATCTCaattcttcttcctctctttcattctctgtcaCGCAAATACACACTTACATGCAGGCAAAGAGATTGATATGGTTTCTCTCATGCTTAAACATCCTCTCATACggtacacactcatacacacatctcatcatattttttttacactgtGACAGTCTATTGTCAGCAATGAGCATCAATGTTCATTTCAACAGGACTCTTGTTTCTCCGTAGACCTGAGACTCTGTGTCTCCCTAGACCTGAGACTCTGTGTCTCCCTAGACCTGAGACTCTGTGTCTCCCTAGACCTGAGACTCTGTGTCTCCCTAGACCTGAGACTCTGTGTCTCCCTAGACCTGAGACTCTGTGTCTCCCTAGACCTGAGACTCTGTGTCTCCCTAGACCTGAGACTCTGTGTCTCCCCAGACCTGAGACTCTGTGTCTCCCCAGACCGGAGACTCTGTGTCTCCCCAGACCGGAGACTCTGTGTCTCCCCAGACCGGAGACTCTGTGTCTCCCCAGACCGGAGACTCTGTGTCTCCCCAGACCGGAGACTCTGTGTCTCCCCAGACCGGAGACTCTGTGTCTCCCCAGACCGGAGACTCTGTGTCTCCCCAGACCGGAGACTCTGTGTCTCCCCAGACCGGAGACTCTGTGTCTCCCCAGACCGGAGACTCTGTGTCTCCCCAGACCGGAGACTCTGTGTCTCCCCAGACCTGAGACTCTGTGTCTCCCTAGACCTGAGACTCTGTGTCTCCCTAGACCTGAGACTCTGTGTCTCCCCAGACCGGAGACTCTGTGTCTCCCCAGACCgggtaaccaaaaatgtgttcaTCATTCAATGAGGTCTGTATCACTTTTGGTGAAAAGAACTGAATATATTAAAACTGTAACGAACTGAACTATGGTTGTTGACGGTTGTTTTGAATGAGTCTCCCTTGATTGTGGTGCTTTGTGTGTTTGGTTAGTGTGTCGGGTTGTTTTCCAGTGTGTTTGTGGGTAGGGTTGTGGTGCAGTGTGACTAACTGGGTCTTGGATTTCGGTGCGTTGGCTATGTGTGTGTTGGGCTAGGATGCaatgttgggttgggttagggtgcTGTGTTTTGTGTCTGGCTGTGTTAGAgtatagtgtgtttgtgtgttgggtGCAGTGTTTGTGTTGTGGTTTGTCTGGCTGTGTTTTCCAGCTCATAAGCGAGGTGTCTCTGAGGGCTATAGAGAACACCTGTTAGATCATCCATCACCTCTCCCTACGCACTTATTCCCCCTGCCAGctgttcatcacacacacacacacacacacacacacaccgacagccCATAGACAATCACTACAACAGACCTCAAAATATTTTTTCACACCCACTTCTTCTGCCATGTTCccctctcagacacacacagcgagagctGCAACTGGCAGTGTATAGAAATGGCTTTATCTGCCATTATGACACAAGCCGTTAAGGCCTACTGCAGCTGTAACTTACAGCTCCGtctgacccacacacacaaatctggAGCTTTTACACTCCCGGCTTGACGTTTTTATGTCACATTTAGAGAAGGAATGGTCTGCTGCTAAATCAGACTTTACACAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTTACTCAACACAGACGTCCTGGTCTGATGCTAAATCAGACTTTACACAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTTACTCAACACAGACGTCCTGGTCTGATGCTAAATCAGACTTTACTCAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTTACTCAACACAGACGTCCTGGTCTGATGCTAAATCAGACTTTACTCAACACAGACGTCCTGGTCTGATGCTAAATCAGACTTTACTCAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTTACTCAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTTACTCAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTTACTCAACACAGACGTCCTGGTCTGATGCTAAATCAGACTTTACTCAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTTACTCAACGCAGACGTCCTGGCCTGATGCTAAATCAGACTTTACTCAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTCACTCAACACAGACGTCCTGGCCTGATGCTAAGTCAGACTTTACTCAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTCACTCAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTCACTCAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTCACTCAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTCACTCAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTTACTCAACACAGACGTCCTGGCCTGATGCTAAGTCAGACTTCACTCAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTTACTCAACACAGACGTCCTGGCCTGATGCTAAATCAGACTTCACTCAACACAGACGTCCTGGCCTGCTGCTAATTACAACACAAATCAGGAAATACGTGAGAGCGGACAATTATCATTTGATAACAACAAACAAAGGTGGTACCAACAGCATGTTCATTTAAATATTCTGAGTGGCTGAGTGACCTGATTCTCTGGATGCCTCTCCCCAATAGCTAAACAACCATACCTTCTGTGCAAGTGCTACTTTATTGTGAAAGGTATGTTGTACAAACCTCTTAGTCTGCTGTTACTTTAAAGGACATGACGATCAACATGTTGTACAACGGTCCGCGAGTGAAACTCTGAAATGAAACACTTATTTCATAGTAGACACTAGATGCCGTtctaataaacagagtggtttctgttttcttcctacaaATATGGCTCTATCTTTTGAATGGTTTATTAAGCTACAACATATTATGACCCCATCACTGAGAAGATAAGACTCTCAGGAACACATGTGTCTTCTGTTTCCCTCTACGATGACCACAAGCTGTTCAAGACTCATTAGAACAGAGTGGACAGGACCAGCCACTAAATCAGAGGGGGAAAAGAACATCATCAATGATTTTACTCAACACAGACAAAATGATTGCCTGATGATCTTCTGAACATCCCAAtacctttctgatgcatttcagttACTTCCAACCATACTTCCTTCAGATTGAATACTGTCAAAAGTACTGTCAGGCTGATTTTGTAATAGCTCCAATTAAAGAAGTAAACATTGGCCGTTGATTACATAATGTTTTGTTACATGGTGGTgttgtgattttatttttttgccaAATTGGGTCGCGCGTCAAAGTTACTGTTAACGACGTCATCAACATGTTGGACAAACTTCTTTGTCTGTTGTAACTATAATGACGTTGTAATACAGAACACAAgcaggacacagacaggcagtCTAAGTAGCAATTTAATGTTCTTAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430982 lncRNA upstream 16003 23058519 ~ 23058747 (+) True G379142
TU430979 lncRNA upstream 20105 23054403 ~ 23054645 (+) True G379139
TU430971 lncRNA upstream 26059 23048456 ~ 23048691 (+) True G379131
TU430955 lncRNA upstream 50937 23023584 ~ 23023813 (+) True G379115
TU430954 lncRNA upstream 51261 23023149 ~ 23023489 (+) True G379114
TU431048 lncRNA downstream 45851 23203871 ~ 23204099 (+) True G379202
TU431114 lncRNA downstream 172348 23330368 ~ 23330594 (+) True G379263
TU431124 lncRNA downstream 193085 23351105 ~ 23351363 (+) True G379273
TU431133 lncRNA downstream 197986 23356006 ~ 23356429 (+) True G379279
TU431136 lncRNA downstream 202204 23360224 ~ 23360688 (+) True G379282
XM_036977066.1 mRNA upstream 67435 22942205 ~ 23007315 (+) False lhfpl2a
NM_001165244.2 mRNA downstream 35854 23193874 ~ 23203566 (+) True tbca
XM_021602145.2 mRNA downstream 50713 23208733 ~ 23214815 (+) False LOC110523452
XM_021602146.2 mRNA downstream 50714 23208734 ~ 23214815 (+) False LOC110523452
XM_021602143.2 mRNA downstream 50715 23208735 ~ 23214815 (+) False LOC110523452
XM_021602144.2 mRNA downstream 50717 23208737 ~ 23214815 (+) True LOC110523452
TU430848 other upstream 67463 22942292 ~ 23007287 (+) True lhfpl2a
TU430672 other upstream 445081 22602110 ~ 22629669 (+) True G378868
TU430626 other upstream 568480 22503752 ~ 22506270 (+) True G378832
TU430417 other upstream 842830 22172535 ~ 22231920 (+) False G378660
TU432291 other downstream 465944 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 476001 23634021 ~ 23637091 (+) True LOC110522832
TU432349 other downstream 582414 23740434 ~ 23741459 (+) True G380340
TU432379 other downstream 680504 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other downstream 680504 23838524 ~ 23842716 (+) False LOC110523468

Expression Profile