RNA id: NM_001165244.2



Basic Information


Item Value
RNA id NM_001165244.2
length 770
RNA type mRNA
GC content 0.41
exon number 4
gene id tbca
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23193874 ~ 23203566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTCACAGAAATCTCGTGATATTATTGTCCTGTGTTGGATAGCAGTAGTTTCACCGTTTTTCGATTGACTATTCACTTATTGTTTATTTTGAGAATATCAGTTAACATGGCAGATCCAAGAATACGACAGATTAAAATCAAGACTGGCGTAGTAAAGCGGCTGGTGAAGGAGAAGGTCATGTATGTCAAGGAGACCAGGCAGCAGGAGGAGAAGATTGAACGACTGAAAGCAGAGGCCTGCGACGAAGAGGCCGACTCCGAGGCCAGGTATGTCATCAAGAAACAGTTGGAGGTGCTACAGGAGTCCAAGATGATGGTTCCAGACTGTCACAGGCGTTTGACCATAGCACACGCAGACCTGTCCCAGATACTAGAAACAGAAGAGGACTTGGCTGAAGCAGAGGAGTACAAAGAGGCCAGGACCGTATTGGATTCAGTGAAGCTTGAAGGATGATGTTCTCACTCTGTAATGCACTACTTAAATGTCTATTTCATTCATCAAGGCTTGTTTggaaacacagacaaacaaaatCGTTCAGCATCTTTTTCTCTTTATCTcgctcttttttttattttttatttctacatTTGAAAACAACGTGCAGTCTGATGTCGACATCCTTCTCCTGAGTGTACAATCTCACACAAGCAGCAAATAAAAACCTATTTCTTTTCTTAACATGGGGGTTTGCTTGGTTTGTTTCTTCAACTATACAGCTGCAAATTAAGCCTGGTTGTATTGTTTAACTCATATTAAAGCTATACAATAG

Function


GO:

id name namespace
GO:0007021 tubulin complex assembly biological_process
GO:0005874 microtubule cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K17292 TBCA; tubulin-specific chaperone A

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU431008 lncRNA upstream 77845 23115685 ~ 23116029 (+) True G379162
TU430982 lncRNA upstream 135127 23058519 ~ 23058747 (+) True G379142
TU430979 lncRNA upstream 139229 23054403 ~ 23054645 (+) True G379139
TU430971 lncRNA upstream 145183 23048456 ~ 23048691 (+) True G379131
TU430955 lncRNA upstream 170061 23023584 ~ 23023813 (+) True G379115
TU431048 lncRNA downstream 305 23203871 ~ 23204099 (+) True G379202
TU431114 lncRNA downstream 126802 23330368 ~ 23330594 (+) True G379263
TU431124 lncRNA downstream 147539 23351105 ~ 23351363 (+) True G379273
TU431133 lncRNA downstream 152440 23356006 ~ 23356429 (+) True G379279
TU431136 lncRNA downstream 156658 23360224 ~ 23360688 (+) True G379282
XM_036977069.1 mRNA upstream 35854 23065654 ~ 23158020 (+) False LOC110523451
XM_036977070.1 mRNA upstream 35854 23065654 ~ 23158020 (+) False LOC110523451
XM_036977073.1 mRNA upstream 35854 23065654 ~ 23158020 (+) False LOC110523451
XM_036977071.1 mRNA upstream 35854 23074750 ~ 23158020 (+) False LOC110523451
XM_036977072.1 mRNA upstream 35854 23074750 ~ 23158020 (+) False LOC110523451
XM_021602145.2 mRNA downstream 5167 23208733 ~ 23214815 (+) False LOC110523452
XM_021602146.2 mRNA downstream 5168 23208734 ~ 23214815 (+) False LOC110523452
XM_021602143.2 mRNA downstream 5169 23208735 ~ 23214815 (+) False LOC110523452
XM_021602144.2 mRNA downstream 5171 23208737 ~ 23214815 (+) True LOC110523452
XM_036977075.1 mRNA downstream 34237 23237803 ~ 23251588 (+) False wdr41
TU430848 other upstream 186587 22942292 ~ 23007287 (+) True lhfpl2a
TU430672 other upstream 564205 22602110 ~ 22629669 (+) True G378868
TU430626 other upstream 687604 22503752 ~ 22506270 (+) True G378832
TU430417 other upstream 961954 22172535 ~ 22231920 (+) False G378660
TU432291 other downstream 420398 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 430455 23634021 ~ 23637091 (+) True LOC110522832
TU432349 other downstream 536868 23740434 ~ 23741459 (+) True G380340
TU432379 other downstream 634958 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other downstream 634958 23838524 ~ 23842716 (+) False LOC110523468

Expression Profile