RNA id: XM_021602146.2


Basic Information

Item Value
RNA id XM_021602146.2
length 2035
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110523452
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23208733 ~ 23214815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTTTTTTAACCACAAACAGAATTTGCTTTTATTTaggctatatatattttttaaacaggtTAAAGTCATAGAGATTTTTTTGAAATAGCATTTCGCACTGGAGAGGTGCGCAATGCTTTCGCACGCCGACCTCCTGGATGCTCGCCTCGGGATGAAGGATGCCGCGGCAGAGCTGCTGGGTCACAGGGAGGCTCTGAAGTGCAGGCTAGGTGGTGGAGTTGGACCTGACCCCGGCCACTCCGGCGAGCTAGCCCCGGGGCCAGACACCGTGGAGGGGACCACCATGCTCCCTGGAGACGATATCAACAATGGTGGATCCAACCCTTCCGGCGTGCAGGCCAACAGTAAAGAGCAACAGGACAAGCAGCAGCAGAATAACTCCAGCCAATCCGGAGGAAGTCAGAGTCAGAAACAGAAGCGACACCGGACCCGATTCACTCCAGCCCAACTTAACGAACTGGAGCGCAGCTTCGCCAAAACGCACTACCCAGATATCTTCATGAGGGAGGAACTGGCCCTACGGATCGGCCTAACGGAATCTCGCGTTCAGgtTTGGTTCCAGAACCGACGCGCCAAGTGGAAGAAGCGCAAGAAGACCACCAACGTTTTCCGCGCTCCGGGAACGCTGCTGCCCACCCACCACGGCCTGCACAGTCAGTTCAACTCTGCTGCTGCCGCCGCCGCGGCCATGGGCGACAGCCTGTGCTCCTTCCACGCCAACGACACCCGCTGGGCCACGGCAGGGATGCCAGGCGTCTCTCAGCTGCAGCTCCCTCCAGCCCTGGGTCGCCAGCACCAGCATGCCATGGCGCAGTCCCTGTCCCAGTGCAGCCTGTCCGGCCCGCCGCCCAACTCCATGGGGCTATCCAACATGTCGTCGAACGGATCCGGACTCCAGTCTCACCTCTACCAGAACCCGTTCCCCGGGATGGTCCCGGCCTCCCTGTCCGGTCCCACCAACGTGACGAGCTCTCCCCAGCTGTGTAGCTCCCCGGAAAATGACGTCTGGAGAGGGACGAGCATCGCCTCCCTGCGGCGAAAAGCGCTGGAGCACACAGTATCCATGAGTTTTACTTAGTAGTAGGCCAACCACCACCAAGCCAAGCACCACGTTTTAAGCGTTTTTCTTTTTACTTTGTCATCTatcattttttgttttgttgttgaacACATCCAGCCCAATACAGTTGGACAAGGATGAGAATGTCTCCAAGCAAAAAAAGCAAGGCAGCTGCAAAACAACAGCCACAGATTTGTTGACACACTAATACTAAAACCAAACGATTTGAAGGTGGATAAATGGGTAAATGTTTAGCTTATTCATTTATGATGTGCATGTATTGATTTATAACTTTTATAACTTGATTTATTTTACATGTAGGctatgtatatttatttatttgtttatcattttatttattaaaaaatatatatttaccacCTCGTTTTCATTTTCTTTGTCTATAACAAAATAGTGCTGATATTTGCTACTGGAGTTTCTAACAGTTTCCACCGGCCGATGGTCGAGGGTGTAAAAACGCTCAAAAAAGAATAAAACTCGTTTTTAATGTCACCTGCTGCACAGCATGTAACCATGATTGGCCACGGGCATGCGCAGTGCACGTGCAGATCTCACACACCTGGGAGTTTTTTTTGTTTGAAAAGCATACAAAGATTCATACAACGGAAGAGGAAGACAAGCGATAATCTCAAAGGAATCACACAACATGGAAACGAACTTGACTGCATGTGCTGGCCAAGGTAAATTTACGGAAACAGGCCTACTATAATTAAGACAAGAAAAATCGACTTGAATATAATCTGTTATATAGGATGTTTTGTGTAGAGGAAGCATCCTTGACTTGTTCCCATTTGGTCAGTTTGTGATATGTTCTAAATTATTGTCTGTGCTTATTATCATATCAGAATTTCTTAAATGTTTGATCTGATACTGAACAAACCATTTCGTTTCATGGCCATGTTTTTATCAATTGACTGTAAATGAACAAATTAAAATCATTTTCAATATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU431048 lncRNA upstream 4635 23203871 ~ 23204099 (+) True G379202
TU431008 lncRNA upstream 92705 23115685 ~ 23116029 (+) True G379162
TU430982 lncRNA upstream 149987 23058519 ~ 23058747 (+) True G379142
TU430979 lncRNA upstream 154089 23054403 ~ 23054645 (+) True G379139
TU430971 lncRNA upstream 160043 23048456 ~ 23048691 (+) True G379131
TU431114 lncRNA downstream 115553 23330368 ~ 23330594 (+) True G379263
TU431124 lncRNA downstream 136290 23351105 ~ 23351363 (+) True G379273
TU431133 lncRNA downstream 141191 23356006 ~ 23356429 (+) True G379279
TU431136 lncRNA downstream 145409 23360224 ~ 23360688 (+) True G379282
TU431191 lncRNA downstream 241550 23456365 ~ 23512877 (+) True G379333
NM_001165244.2 mRNA upstream 5168 23193874 ~ 23203566 (+) True tbca
XM_036977073.1 mRNA upstream 50714 23065654 ~ 23158020 (+) False LOC110523451
XM_036977075.1 mRNA downstream 22988 23237803 ~ 23251588 (+) False wdr41
XM_036977076.1 mRNA downstream 23658 23238473 ~ 23251588 (+) True wdr41
XM_036977079.1 mRNA downstream 156151 23370966 ~ 23391981 (+) False LOC110523456
XM_036977080.1 mRNA downstream 171840 23386655 ~ 23391981 (+) True LOC110523456
XM_021601299.1 mRNA downstream 206828 23421643 ~ 23422884 (+) True LOC110522829
TU430848 other upstream 201447 22942292 ~ 23007287 (+) True lhfpl2a
TU430672 other upstream 579065 22602110 ~ 22629669 (+) True G378868
TU430626 other upstream 702464 22503752 ~ 22506270 (+) True G378832
TU430417 other upstream 976814 22172535 ~ 22231920 (+) False G378660
TU432291 other downstream 409149 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 419206 23634021 ~ 23637091 (+) True LOC110522832
TU432349 other downstream 525619 23740434 ~ 23741459 (+) True G380340
TU432379 other downstream 623709 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other downstream 623709 23838524 ~ 23842716 (+) False LOC110523468

Expression Profile