RNA id: XM_036977075.1


Basic Information

Item Value
RNA id XM_036977075.1
length 2214
RNA type mRNA
GC content 0.48
exon number 14
gene id wdr41
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23237803 ~ 23251588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTGCGCTTCCGTAGTTAGCTACTGTCACATGAATGTTTTGTTGCGAAAGCTCAGCTTGACAGTTTCATGTCAAATTTCACGGGTCTTGGTTTGCCAGCTGGATCTCAAGTGGCAGATTTCCCTACTAAATAACAACGAGATATCCCCGACAGCTATTTTAAAGGCGTCAAGACGACCGTGATCTGGAAACGTCTCACGCCAAATGATTGTTAAGAATCTCCTGCATAGCCATTAGCCAGTCATGCTGCGATGGATACTCGGTGGTCGGGAAGCACAGGGGTCTGTCGAGAAAAACCCTGTGCTATTCATTGGGGAGGAACAGCCCAAAAACTGGTTCACTGAACTGCAGGTGCTAAAAGGACATTTTGACATTGTTCGATTTCTGGTGCAGATTGATGACTTCAGGTTTGCGTCTGCAGGAGACGATGGTCTGGTGTTGGTGTGGAACGTTGAGacaggagagaggctgctggaactaaggggtcacTCCCAGCAGATAACGGCCAtgacagcctacacacacaccagtggagagaacacacacacctccctcatcACAGCTTCCTCGGACCGCACCCTCAGTCTGTGGGACCCAGAGACAGGCAACAGGGTTCAGACCGTCTCAGACCTCCAGTCCTCTGTCAAGTGTCTGCTGGTGTTGGAGCGGTTATGTGTGTGGGTGTCGGGAGGAAATGAGTTGTGTGTGTGGAACAGAGACTTCCAGCTGCAGTGTCAGAGCCAGCACCACGACGACACAGGAATCAGTGCCACGGTGGAGTTGCCTAAGAACTGTATAGCAGCAGCTATGGACAAAGATATAGTGATTTTCAGGCTGACCATGTCCACAGGGTCCCGGTTGTCTGTAGCAGAGGTCAGACGTCTATCTGACCACCAGGACAGCATCCACGCTCTCATCAACATCAATGATGGCCTATTTGCCAGTGGGTCCCATGTTGGCGAGCTGATCCTGTGGGACGCTGTTGATTGGACGATTATGGCCTATGAGCACATCCTGTGGGAGGAGTCTCAGACCGACACCCAGGCTGAGATCCGATTGGCCGCTCCGAAACCCAGTGAGATGTCCATCCAACAGCTGACATCCGATGGAGAGCTGATGGTGGCTGCAGTGGGCAGTGGTCTGTATGTGTACAGCGTCATCACTAAGAGTGTTGTGGCCTACAGGAAGACAGCCCACGACTCCAACGTACTACACACCATGCTGCTGCCTGATGGggggCTGATGTCGTGCTCCGAGGATGGCAGTGTGAGGATTTGGGAGATGCAGGACCTCCTGTTACCTGCAGAACCAGCCTCAGCAGgGTTCTTTGGGATGTGGACTTTCGGCAGGTCCAATAAGCAGGCGGGGCCTCCTGTGAAGAAGGTTCTTGAACTCCCCAGTCTCAGAACATTGGAACTGACGGGCGACCTGATTGGACACTCAGGGGCCGTGCAGATGTTTGTGAGTTTTGGGGAGAAGGGTCTGGTAACATGTTCTACAGACCACCTGCTGATTGCatggaagaacagagagagagagtctcaccTCCGCAGTCTCGCCCTCTTCAGGAAACTGGAGGAGAACGGGGGACTCTGACCACCCACCCCCACCTGTCAGTCACTAACACAATTATTTATGATTTTACAGAACACTTTCTACTGGAAGTTAAGGTTTTAAAGAGGGGTGGAATGTATTTGTTCCTAggtgttgttatttcactgtctCTGAGGttcatggatgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatgacacatccatatatatatataatgtgtacaATGTGATGGATATTTCTTTACCATGTTTGTTGGTTTAGTGATTTTACAACGTGTGAAATTCTGTGTGTTTCAAGTCTTCAATTTTAATCTGATGTTCTTCTATATGCCTGTCTTCAAGTTGGTCACACATTTATTTGATCTGATGTTCTTCTATATGCCTGTCTTCAAGTTGGTCACACATTTATTTGATCTGATGTTCTTCTATATGCCTGTCTTCAAGTTGGTCACACATTTATTTGATCTGATGTTCTTCTATATGCCTGTCTTCAAGTTGGTCACACATTTATTTGATCTGATGTCTGTCTGGATATTTTAACTATTTTAACCCCACAGTTGCTTGTTTTTTTAAAGCCTAAAAATGTCACAAATTAAAGATACAACTGGTCACAAACACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU431048 lncRNA upstream 33704 23203871 ~ 23204099 (+) True G379202
TU431008 lncRNA upstream 121774 23115685 ~ 23116029 (+) True G379162
TU430982 lncRNA upstream 179056 23058519 ~ 23058747 (+) True G379142
TU430979 lncRNA upstream 183158 23054403 ~ 23054645 (+) True G379139
TU430971 lncRNA upstream 189112 23048456 ~ 23048691 (+) True G379131
TU431114 lncRNA downstream 78780 23330368 ~ 23330594 (+) True G379263
TU431124 lncRNA downstream 99517 23351105 ~ 23351363 (+) True G379273
TU431133 lncRNA downstream 104418 23356006 ~ 23356429 (+) True G379279
TU431136 lncRNA downstream 108636 23360224 ~ 23360688 (+) True G379282
TU431191 lncRNA downstream 204777 23456365 ~ 23512877 (+) True G379333
XM_021602145.2 mRNA upstream 22988 23208733 ~ 23214815 (+) False LOC110523452
XM_021602146.2 mRNA upstream 22988 23208734 ~ 23214815 (+) False LOC110523452
XM_021602143.2 mRNA upstream 22988 23208735 ~ 23214815 (+) False LOC110523452
XM_021602144.2 mRNA upstream 22988 23208737 ~ 23214815 (+) True LOC110523452
NM_001165244.2 mRNA upstream 34237 23193874 ~ 23203566 (+) True tbca
XM_036977079.1 mRNA downstream 119378 23370966 ~ 23391981 (+) False LOC110523456
XM_036977080.1 mRNA downstream 135067 23386655 ~ 23391981 (+) True LOC110523456
XM_021601299.1 mRNA downstream 170055 23421643 ~ 23422884 (+) True LOC110522829
LOC110522830 mRNA downstream 219400 23470988 ~ 23474212 (+) True LOC110522830
XM_036977086.1 mRNA downstream 372333 23623921 ~ 23678038 (+) False LOC110522832
TU430848 other upstream 230516 22942292 ~ 23007287 (+) True lhfpl2a
TU430672 other upstream 608134 22602110 ~ 22629669 (+) True G378868
TU430626 other upstream 731533 22503752 ~ 22506270 (+) True G378832
TU430417 other upstream 1005883 22172535 ~ 22231920 (+) False G378660
TU432291 other downstream 372376 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 382433 23634021 ~ 23637091 (+) True LOC110522832
TU432349 other downstream 488846 23740434 ~ 23741459 (+) True G380340
TU432379 other downstream 586936 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other downstream 586936 23838524 ~ 23842716 (+) False LOC110523468

Expression Profile