RNA id: XM_036977079.1


Basic Information

Item Value
RNA id XM_036977079.1
length 1907
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110523456
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23370966 ~ 23391981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttgGAGGACCAACCTATCAGACCTCTTACAGCAGGAACTAacatgtccacccaatcaaaggatcagagtatgaatctagtactgaaagcataagctacagctagctagcattgcagtgcataaaatgtgctgagtagttgactcaaagagagagaaagacaatagttgaacagttttgaacacattcatttcttcaaaaatgaaggagaagcatgAAAGAGAAAGCTAGCTATATTTtgttatattttatttttcactttcactcactagtgaatgcagctagctagtttagcctactcaaacacccgacTCAAAcggagagggatgctatgtttgctagctggctatggctattcAACACTGGAACTcatccaagtcaagGAAAATGAGATCACTCCAGAAGGATTATTTTCACTTCTTAATTCAGAACTCAAAAGAGAAATACCAGAGGAATTAATTTACAGCCGACCTCTCCggtgtCTGGACATGGTGGCAGCAGAGGGTCAGTTCACCTTTACAGCAGACCGGCCTCATCTCAGCTGTGCTGCTTTCTTCATCGCTGAGCCCAACCAGGTCATCAATGTGGAGTATGACAGCGTTGACATCGACTGCAGAAGTGGAGACTTCATCAaggTGTTTGATGGCTGGGTGATGAAGGGAGAGAAGTTCCCTAGTTCCCAGGATCACGCCCTGCCGCTGATGGAACGCTACGTAGACTACTGCGACTCCGGGACTGTCAGGAGAACCGTACGGTCATCTCAGAACGTTGCAATGGTGTTCTTCCGCGTTCACACCGTCGGCAGCTCCTTCACGCTGACTGTCAGGAAACCCATCAACCCTTTCCCCTGTAACATCATCTCCCAGACACCAGAGGGCAGCTTCACCATGGTGATACCCCAGCAGCACAGGAACTGCAGCTTCTCCATCATCTACCCCGTGGAGATCAAGATCGCTGAGCTCAGCCTGGGACACCTCAACGACTTCCCCATCAAGaagTCCATGCCAGGCTGTGCTGGAGCAGGGGACTTTGTGGAGCTGCTGGGAGGGAACGGGATGGACCCGTCTAAGATGTTCCCAGTAGCTGACCTCTGCTACAACTTCAACGGCCCCGCCCAGATGAAGATAGGTTGTGACAACACTGTGGTGAGAATGGTGTCCAGCGGTAGGTTTGTCAACCGGGTGGCGTTCCAATACCGGCTGCTGGACCGGCAGGAGCTGCAGAGGATCAAGGTGAACAGTGTGGAGGATTTCTGCTTCACTGGTTGAGctctccctatctatctctcCACCTCCTATATATACCACCTAGCTAATGGGGACCACCCATCACTGGCTGAGctctccctatctatctctcCACCTCCTATATATATACCACCTAGCTAATGGGGACCACCCATCACTGGCTGCCAAATCTACCATGAGACTGATTACAGAAAGAAATCCTGAGGATCGCCATAACGTTCTGTTCTGTACTCCTTTTTGAATTTAAAGAGattgatttattttttacctcatttgttttttttcttcactatATGTTAAATGAATTGTGGCTGGCGCTCAAGCTTAATAAAGAGTTATTTTGTGTTTGTGGGCAGTTCTGCTATTGGTTTGATTCCGTGTTTATGTTGTCTAAGTTGTGTGATTATATGAATGCCAGTGAAAACAGACCAGTGAGGGTGTTAGCCGGGTGTTTTGGTTCACGTTCTTTACAAGGAAGGGTGTTGAAAAACTGAATGTttctttgtatttattttgtgagACGATGTGTGTCGTTTTGGGACTGTGGCCGGAGGCAAGTGTTCAATAGAGTATGTTTAATACATGTTCATTGCTGTTATCTATATTTATTTGTATCAAACTATTTTTTTGTAATAAAACTGAGCTGCATGGTTAAGCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU431136 lncRNA upstream 10278 23360224 ~ 23360688 (+) True G379282
TU431133 lncRNA upstream 14537 23356006 ~ 23356429 (+) True G379279
TU431124 lncRNA upstream 19603 23351105 ~ 23351363 (+) True G379273
TU431114 lncRNA upstream 40372 23330368 ~ 23330594 (+) True G379263
TU431048 lncRNA upstream 166867 23203871 ~ 23204099 (+) True G379202
TU431191 lncRNA downstream 64384 23456365 ~ 23512877 (+) True G379333
TU431208 lncRNA downstream 84499 23476480 ~ 23515214 (+) True G379350
TU431215 lncRNA downstream 98098 23490079 ~ 23492379 (+) False G379356
TU431220 lncRNA downstream 98098 23490079 ~ 23492379 (+) True G379356
TU431264 lncRNA downstream 168041 23560022 ~ 23567553 (+) True G379392
XM_036977075.1 mRNA upstream 119378 23237803 ~ 23251588 (+) False wdr41
XM_036977076.1 mRNA upstream 119378 23238473 ~ 23251588 (+) True wdr41
XM_021602145.2 mRNA upstream 156151 23208733 ~ 23214815 (+) False LOC110523452
XM_021602146.2 mRNA upstream 156151 23208734 ~ 23214815 (+) False LOC110523452
XM_021602143.2 mRNA upstream 156151 23208735 ~ 23214815 (+) False LOC110523452
XM_021601299.1 mRNA downstream 29662 23421643 ~ 23422884 (+) True LOC110522829
LOC110522830 mRNA downstream 79007 23470988 ~ 23474212 (+) True LOC110522830
XM_036977086.1 mRNA downstream 231940 23623921 ~ 23678038 (+) False LOC110522832
XM_036977085.1 mRNA downstream 231942 23623923 ~ 23678038 (+) False LOC110522832
XM_036977088.1 mRNA downstream 231942 23623923 ~ 23678038 (+) False LOC110522832
TU430848 other upstream 363679 22942292 ~ 23007287 (+) True lhfpl2a
TU430672 other upstream 741297 22602110 ~ 22629669 (+) True G378868
TU430626 other upstream 864696 22503752 ~ 22506270 (+) True G378832
TU430417 other upstream 1139046 22172535 ~ 22231920 (+) False G378660
TU432291 other downstream 231983 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 242040 23634021 ~ 23637091 (+) True LOC110522832
TU432349 other downstream 348453 23740434 ~ 23741459 (+) True G380340
TU432379 other downstream 446543 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other downstream 446543 23838524 ~ 23842716 (+) False LOC110523468

Expression Profile