RNA id: TU432352



Basic Information


Item Value
RNA id TU432352
length 938
lncRNA type sense_over
GC content 0.45
exon number 1
gene id LOC118964576
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23737834 ~ 23747312 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCAACTTACCAATTAAAATGGCAGTTTTGAGTTATTGTCTTTCTGCTTGAAAACACCACATCGAAAGTTATATTTTGCATGCATTATATCCACCTCTAACCTTAGCTCAACCTCTTTTcgattttgttatttattttccaGGCTGAGGAATATCCTTTCTGTAGTGGGCCCAGATGCACTAAAGAAATCTAAGAAGGATGATGAAGGAAACTTAAATTacttctaccaaatctctatcaacatgttaaatgtgcaaccagagggaaaacatttctagatcacctgtactccacatacagagacgtgaacaaagctctccctcgccctccatttggtaaattcaaccacaactctatcctcctgattcctgcttaccgcaagcaaaaatttaagcaggaagcaccagtgactcggtctataaaaaaatggtcagatgaagcagatgctaaactacaggactgatgcttaactacaggactgctttgctatcacagactgcaagcagggcttgcaaactattacagactacaaagggaagcacagccgcgagctgcccagtgacacgagcctaccagacgagctaaatcacttctatgttcgcttcgaggcaagcaacactgaggcatgcatgagagcatcagctgttccgggcaactgtgtgatcacgctctccgtagccgacgtgagtaagacctttttaaacaggtcaacatacacaaggctgcgggccagatggattaccaggacgtgtgctctgggcatgtgctgaccaactgaccggtgtcttcactgacattttcaacatgtccctgattgagtctgtaataccaacatgcttcaagcggaccaccatagtccctgtgcccaagaacacaaggcaacctgcctaaaagactacagacccatagcactcacgtccgtagccatgaagtgctggT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU432277 lncRNA upstream 119618 23617626 ~ 23618216 (+) True G380279
TU432275 lncRNA upstream 121581 23615857 ~ 23616253 (+) True G380277
TU432256 lncRNA upstream 133102 23604518 ~ 23604732 (+) True G380258
TU431268 lncRNA upstream 151746 23566477 ~ 23586088 (+) True G379395
TU431264 lncRNA upstream 170281 23560022 ~ 23567553 (+) True G379392
TU432351 lncRNA downstream 279 23739050 ~ 23739427 (+) False LOC118964576
TU432347 lncRNA downstream 3054 23741825 ~ 23747278 (+) True LOC118964576
TU432366 lncRNA downstream 14450 23753221 ~ 23753477 (+) True G380357
TU432372 lncRNA downstream 23250 23762021 ~ 23762408 (+) True G380363
TU432374 lncRNA downstream 24532 23763303 ~ 23763523 (+) True G380365
XM_021602162.2 mRNA upstream 2366 23713080 ~ 23735468 (+) False LOC110523463
XM_021602163.2 mRNA upstream 2366 23724027 ~ 23735468 (+) True LOC110523463
NM_001165176.2 mRNA upstream 25957 23709843 ~ 23711877 (+) True vatg1
XM_036977086.1 mRNA upstream 59796 23623921 ~ 23678038 (+) False LOC110522832
XM_036977085.1 mRNA upstream 59796 23623923 ~ 23678038 (+) False LOC110522832
XM_021602173.2 mRNA downstream 99731 23838502 ~ 23842045 (+) False LOC110523468
XM_021602178.2 mRNA downstream 109447 23848218 ~ 23853553 (+) False stard4
XM_021602175.2 mRNA downstream 109465 23848236 ~ 23853553 (+) False stard4
XM_021602174.2 mRNA downstream 109467 23848238 ~ 23853553 (+) False stard4
XM_021602177.2 mRNA downstream 109467 23848238 ~ 23853553 (+) True stard4
TU432291 other upstream 100743 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other upstream 100743 23634021 ~ 23637091 (+) True LOC110522832
TU430848 other upstream 730547 22942292 ~ 23007287 (+) True lhfpl2a
TU430672 other upstream 1108165 22602110 ~ 22629669 (+) True G378868
TU430626 other upstream 1231564 22503752 ~ 22506270 (+) True G378832
TU432349 other downstream 1663 23740434 ~ 23741459 (+) True G380340
TU432379 other downstream 99753 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other downstream 99753 23838524 ~ 23842716 (+) False LOC110523468
TU432381 other downstream 99753 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other downstream 99753 23838524 ~ 23843846 (+) True LOC110523468

Expression Profile