RNA id: TU432383


Basic Information

Item Value
RNA id TU432383
length 3940
RNA type TUCP
GC content 0.36
exon number 3
gene id LOC110523468
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23838502 ~ 23844345 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGACATAAATTCAGAAAGTCTTCACGCTCTCTCCCAACTAAAATAGTTTCTACTGGATTTTGCACCGACTCGGATAAATTATTTATTCTCGGGATAACAATAAGATCGTGCAGAAACATGCCTGACAAGAACAGTCGGCTGCGTCAGGCTCAGGAAGAGGCGGAGGAGGTGAAGGTCATCATGATGGACAACATGGAGAAGACCGAGGAACGCAAGGCGAAACTGCAGGACCTTGACAAAAGGGCTGAGGAACTGAAGTTCAAAAGCAAGTCCTTCCACAAGACCTCAATGAAGGTGAAGGAGCAGAAGAAATGTGACAACATCAAGGCCAAATGGAAGCTCATTGCTGTTGTTGCAGCCTCGGCCATAATTGTCATTCTAGTAGCTACCTTCATGTTGGTCAACAGATCAAGCCCTGAAAACACACATGATATAGGCAGTATCCCAATGAACGAAGGAGGCATTACACCAACAACCATTGGGCCTGGGAAGTAGGCTATAGCCTAGAATCAATAGGGCTGAAGAGGAAACAAATAGTGGGCACTACTTGAAGTATACTAATATCGGTGAAAGGTATTTTCTAGCTTCTGTTGTTGATACTTTACTTGTCCTTGTACACCCATTGGAGACTACTACAGATCAATCAGGGAAGATAAATAACTTATTAGGTGCATAACTTGTTAAAGAATTGCATTATTCAGAATCTTGTTGGGATTACCAATTATCTGTAAAATATTACATCTGATAATATTGAAATCAGAAAAGGTAAGACATTAGGGGTGATGAGATAGGAAATAGATCAAATCTTTCAACAGCATTTATAATGCATTACTGTACATCTTGGGATACATAACTAAGGTTAACCTGAATATAAAATAGttgtattttgtagtttatttgaaAATACCATCTTTTCAAATACTCGTGGCAATAATTTCCTTTGATATTCAAATACAGGTCTCAGAAAAAAATTCTGTATTTTGAATACGTCTTTCAGAAAATACTGCAGAGAAATAGCTATTTTTTGAATAAAAATATTTTATGGTTGCCAAATATTTTAGGAAAAACCAAAAACTACAACAGTTGCGTTGAAATATAATGACCATAAGCACATGGTTTGGAGGGCTCCTAGATATGAATCTTAATATAGCCTAGAATTAAATAAATGAAGGACATGGAATCCCCTCAACATTAGAGTAGACCACTTTTGCAGCTTAAAAATGACCAACAAATATACAGTATTTTCATAATGATTGAGACAAGGTAATACAGTAACACTTGACAtcaagttcttatacatgtgtagtaATTTTGTGACAATAGCGACATTGTTGTTACATAGGACCTTGGAAATTGCTTTATAATTGCACAATGGAGTTATTACACAAGTGGAATAAGGACAGTCATTATTCCTTGTGTACATGAGTTAAAAATGCAGCTGATTGCTATGCAATTAAAATGCAATTACCAATTATGTAACATGCTAATAAAATGTTTAAGTTTTATTACCCAGGCACAAGAACAGTTGTTAAGTGGAATGCTAATGGTTACAAAATATGGCTATTAAGTGTCAAAAGGAAACTAAATATCTCAAAACTTAAATAACTATAGCCAAAATCATGTTAGTTTGTATTCTGAGTAAACTGTCTCTTTAAATATGTTATAGTGTGTGTTTGAAACAACACTTACCCACAGATGGACAAAGAGTTAAGTTGTTTTTGCTAAGCATCCAACTTGCTGTTTGCAGATGGCTTTGAATTTCTCTGCAGTAATTTCAGGTGTCATAAAATTAATTGCAACTTTCTACCTTTTCAGTGGCATGTTGAGTCAGTCGAACGTCAACTGATTTATACTTATCTTTACAAAATATCATTGGTTTGACTTGATTATGTACTCCTATGGCAATGGACATTTACAGAATGTTCAGATATAAAATGTGTTGTGTATATCAAATATGACTGTCAAATAGAATGGTATAGTATAGGAGATTGTGTGCGAGCACTATTCATTATTTATATCTTCAACATGCAGTTGCAGATAAACTTTGTTAGTTGAAGGCAGACAATCCAATAGTTTCTTAAAAAGTAGCCACTTCCTGAGATCGGTATTGAAATATAAAAACAAGGTACTTGCTTTATCAGTTGCGTATTGAAATGGTTTTAGAAAATAGTCATTTTTTGGGGATCTGTATTCAAATACTTTGTCACCTCCAAAGTAACTATTTGTTCCCCCTTAAATGGTTACCTTCCACAAAGCATAGTTAAAACTAAAGTTATCCCAGATCTGAACCTGAATAACCTCACATTTTCAATGACACCATTCATTTCCCAAAGATATATCCAGACAaaaatgtgtttatattttaCTGAAGGTACACCACCATTTACTCTGTCATTCTTGAAGGACTAGTTGATAGACGTCACGTGTTGACAAAACAAGGCATTCCATTGTCAAGATCAGGATTTAACTGACAATATAATTAAATTTTTAGAAATGAGTGTAACGTCCCTCAATGCTGAACAACTGATTGATAGTCACATTAAATAGGCAATAGCCAAAATGCCCTTGCTTGCTAAATAACTGACGTTTGTAGTGTAAACACAATGGGATTATGTTTTTGACAATGACACCTGTTCAACCCTTTTATAAACAGTCAACAGGAACTCCCCAATAGCCAGCTGTGTCTAGTTCATTGACCAGTTGAATGGACATTGAgtcaaaaatatgttttgttatcTTGCAATTGcattattgatttattttatcCAGTAAATTaaagtagattttttttaaaagtacaTTAACCCTGATTGCTCATTATTTCAACACGATTGGCTGGCAATTACCAATAGGCTATTTTGTATAAGTGATTTGAATGTATCAACCTTACTGCATTCCAAAGGGGAAATAATCTCCTTTCCCTCATCACAACTCTGCCAGATGGTTTAGAATGTTTAAATTCCCTTAATACATACTTTGACTCTCCCCTTTCAACCTATCCAATCATTTGCAAAAAGTCAAGGACAAACTAAATATAACGTTTTTATATGGAATTCAGCCTAAATCACATGGCATTGGTTTTGCATGCCAGTTTACCCCGGTGAAGGGATTTTGCACTTGATTCAAAAACCTGCATCTCCAGGAGTGACATCGAAAGACAACTGTTCCACCCAATGAGATGTAGTAACCGTAAATGACTGAACGGGGTGCTCGTTTGAAGAAACTGTGCATCCAGGGGCGTCATTTCAGCAAAACAATTaagctcatttactgcatttctacacaatttaaaaactaaaacaaagacattatCACCTTGTTTCTGTAGTTTCATTCACATCAATAGGAGACTTGCCCAAGCATCAGTGTAATGGGTGCATGTCCGTGGCAGTGAAGTCAGAGGCGCAGGAAAACAAACTTGGTATAAACGGCGTCGTTTAATAAGTGCTAATAAAACTCCAAAAACCAAAATAataagtgggtacaaaacccgtcacaCATCGTCACATGACTTGCACATAACATACAATAATAcatctccgacaaggacatgggggggggggaacagagggttaaatacacatgtaattgatgggattggaaccaggtgtgaaggaagacaagacaaaaccaatggaaaatggatcagtgatggcagaaggtcggtgacgtcgacagccgaacaccgcctgaacaaggagagggaccgacttcggtggaagtcgtgacaatcagACAGTTACCATATAATATTCATTCTGAAATAAGTATGCCTAAAATAGAAGAAAGtctctacaagccagaatgtcGAATAAAATTATATTTACAAGTACTTTACCGGTTGTCTGTGCCTTTGATCCTTTTGACGGTAGGAGGTGGAAATAGGGTATCCACAGTAAAGTGTTTCCCCGACTTTTTAGTAAATTCTGTCTCTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432387 lncRNA upstream 30588 23807214 ~ 23807936 (+) True G380372
TU432345 lncRNA upstream 72680 23763779 ~ 23765844 (+) True G380336
TU432374 lncRNA upstream 75001 23763303 ~ 23763523 (+) True G380365
TU432372 lncRNA upstream 76116 23762021 ~ 23762408 (+) True G380363
TU432366 lncRNA upstream 85047 23753221 ~ 23753477 (+) True G380357
TU432451 lncRNA downstream 104747 23948593 ~ 23948796 (+) True G380431
TU432453 lncRNA downstream 109213 23953059 ~ 23953354 (+) True G380433
TU432454 lncRNA downstream 110376 23954222 ~ 23982341 (+) True G380434
TU432477 lncRNA downstream 138605 23982451 ~ 23982673 (+) True G380457
TU432481 lncRNA downstream 148233 23992079 ~ 23992280 (+) True G380461
XR_005051685.1 mRNA upstream 91212 23738704 ~ 23747312 (+) False LOC118964576
XM_021602162.2 mRNA upstream 103056 23713080 ~ 23735468 (+) False LOC110523463
XM_021602163.2 mRNA upstream 103056 23724027 ~ 23735468 (+) True LOC110523463
NM_001165176.2 mRNA upstream 126647 23709843 ~ 23711877 (+) True vatg1
XM_036977087.1 mRNA upstream 160486 23623925 ~ 23678038 (+) False LOC110522832
XM_021602178.2 mRNA downstream 4372 23848218 ~ 23853553 (+) False stard4
XM_021602175.2 mRNA downstream 4390 23848236 ~ 23853553 (+) False stard4
XM_021602174.2 mRNA downstream 4392 23848238 ~ 23853553 (+) False stard4
XM_021602177.2 mRNA downstream 4392 23848238 ~ 23853553 (+) True stard4
XM_036977099.1 mRNA downstream 17305 23861151 ~ 23872777 (+) False marveld2a
TU432349 other upstream 97065 23740434 ~ 23741459 (+) True G380340
TU432291 other upstream 201433 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other upstream 201433 23634021 ~ 23637091 (+) True LOC110522832
TU430848 other upstream 831237 22942292 ~ 23007287 (+) True lhfpl2a
TU430672 other upstream 1208855 22602110 ~ 22629669 (+) True G378868
TU433317 other downstream 843893 24687739 ~ 24776429 (+) True G381239
TU434321 other downstream 1381596 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 2331099 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 2593773 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 2593813 26437659 ~ 26460535 (+) True LOC110522865

Expression Profile