RNA id: XM_021602178.2


Basic Information

Item Value
RNA id XM_021602178.2
length 1781
RNA type mRNA
GC content 0.47
exon number 5
gene id stard4
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23848218 ~ 23853553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCTGACCAATAGGAACACGGAAAATATCAAACACAGGAAACGACTACACTTCTGATTGGGTGATAGAGGAGCTCTCGCATACAGGGACAGAATTTTCGCTCACCGTTTGCAGATGTGTTTACTATAAATACATGAAAACTGAACCACTATCGTAAATTGCAACACCATTCAAAGAAAGATGTCACGGTATGGAGAAAGTCATCAGAGGAGTTTCATGGCTATCTGTATAAATCCCAGGGTATGGTCGACGATAACCCCAATAGAATAGTGGATTACATACGCCCTGGGCCTTATCGATTAGACTGGGATAGTTTGATGACAGCAATGGACATAATAGAAAACCTTGATCAGggctGTTGTGTGATGAGGTACACAACTGCAGGCCAGCTGTGGAACATCATAGCTCCCAGAGAGTTTATTGATTTCTCCTACACCACAGACTACCAGGATGGACTATTGTCCTGCGGTATCAGTGTGGAGCATGAGGAGCAGCATCAGAGTTATGTCCGGGGCTTCAACCACCCATGTGGCTGGTTCTGTGTGCCCACCCCAGATAGCACCACCACCCCAGCCCAGAGCCTCCTGACAGGGTACATTCAGACAGACCTCCGGGGTATGATCCCCCAGTCTGCCGTGGACACAGCCATGGCCAGCACCCTCATCAACTTCTACACTGACCTGCGCAGGGCTCTGAAGAAGGCCTAACCAGTACTAGCCCGGTTGCCAGATTGGTTTATGCTTTAGCCAACTCTGTCGTATTTGTTGTTATACTGAATGCATGGGATGGCAAGGGAAGTAAGAGGAGTTGGCTAAAACACGTTCAAATCTGGCGACTAGGCTAAACCAGTACATCCTAACAGCACTCCTTTTTTAATACACCAGTCGATTGATCAGTCAGTCTATACTCCACCCTCATAGAGGGCTATAGAGATCCAACTCCAATTCACACCAACTCAGGGCAGGATCCAGTTTAGGTTGAAACAGGGTAGGAGTTAAAGGACATGGTCTGACCTGGTCTGCTGCTCACTGGACTTTGGAGTTGTGACTTGTTATTTGTCTGCTCTTTAAATCATTATATAATACTGAAAATTGCTACGGGATTAAGGTATTACACAAACACTGAAGCACTTGATCAAAGTCGATGTTTGCCTTTTTTGTTGATCTCTTTTGCTGATTTCGGACAAACATCGAACATACCCAACAGATTAAATCGTTGGGGGTAGATAGATAAAAAAATATAGGTAGACAGACAGCCAATACAATCAATGCAATGTTGCTTTTAGTTGAAGTTACACGTGAAAGTGTTTGCAGGACTATACATTGGAATTTGACTggcgtgtcacgccctgatctgtttcacctgtccttgtgcttgtctccacccccctccaggtgtcacccatcttcgcTATtatccctgtgtatttatacctgtgttctctgtctgtttgttgccagttGGTCTTGTTAGTTCAAGTTTATCAGCGGTTTTCCTGGCAGCGCCTAtcgtttcccagcctctctttccTCGTCatcctggtttttgacctttgcctgtcctgaccctttACCCGCCCGTCTGAcctctctgcctgaccctgagcctgcctgccgtcctgtacctttgctccacctctggattactgaactctgcctgtccctgaccctgagtccgcctgccgtcctgtacctttgccttacCCTGGAtcttcgacccctgcctgccttgacctgtctttgcctGCCCCTATTGCTACAATAAACATGGTTACTTcaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432387 lncRNA upstream 40282 23807214 ~ 23807936 (+) True G380372
TU432345 lncRNA upstream 82374 23763779 ~ 23765844 (+) True G380336
TU432374 lncRNA upstream 84695 23763303 ~ 23763523 (+) True G380365
TU432372 lncRNA upstream 85810 23762021 ~ 23762408 (+) True G380363
TU432366 lncRNA upstream 94741 23753221 ~ 23753477 (+) True G380357
TU432451 lncRNA downstream 95040 23948593 ~ 23948796 (+) True G380431
TU432453 lncRNA downstream 99506 23953059 ~ 23953354 (+) True G380433
TU432454 lncRNA downstream 100669 23954222 ~ 23982341 (+) True G380434
TU432477 lncRNA downstream 128898 23982451 ~ 23982673 (+) True G380457
TU432481 lncRNA downstream 138526 23992079 ~ 23992280 (+) True G380461
XM_021602173.2 mRNA upstream 6173 23838502 ~ 23842045 (+) False LOC110523468
XR_005051685.1 mRNA upstream 100906 23738704 ~ 23747312 (+) False LOC118964576
XM_021602162.2 mRNA upstream 112750 23713080 ~ 23735468 (+) False LOC110523463
XM_021602163.2 mRNA upstream 112750 23724027 ~ 23735468 (+) True LOC110523463
NM_001165176.2 mRNA upstream 136341 23709843 ~ 23711877 (+) True vatg1
XM_036977099.1 mRNA downstream 7598 23861151 ~ 23872777 (+) False marveld2a
XM_036977096.1 mRNA downstream 7599 23861152 ~ 23872777 (+) False marveld2a
XM_036977097.1 mRNA downstream 7607 23861160 ~ 23872777 (+) False marveld2a
XM_036977098.1 mRNA downstream 7608 23861161 ~ 23872777 (+) True marveld2a
XM_021601275.2 mRNA downstream 20051 23873604 ~ 23883341 (+) False oclna
TU432381 other upstream 3873 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 4372 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 4507 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 5502 23838524 ~ 23842716 (+) False LOC110523468
TU432349 other upstream 106759 23740434 ~ 23741459 (+) True G380340
TU433317 other downstream 834186 24687739 ~ 24776429 (+) True G381239
TU434321 other downstream 1371889 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 2321392 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 2584066 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 2584106 26437659 ~ 26460535 (+) True LOC110522865

Expression Profile