RNA id: trnaa-ugc-9


Basic Information

Item Value
RNA id trnaa-ugc-9
length 72
RNA type mRNA
GC content 0.54
exon number 1
gene id trnaa-ugc-9
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 24704715 ~ 24704786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggatgtagctcagtggtagagcgcatgctttgcatgtatgaggccCCGGGTTCAATCCCCGGCATCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU433311 lncRNA upstream 25017 24679450 ~ 24679698 (+) True G381234
TU433259 lncRNA upstream 58845 24645017 ~ 24645870 (+) True G381190
TU433262 lncRNA upstream 59856 24644128 ~ 24644859 (+) True G381191
TU433242 lncRNA upstream 92276 24573470 ~ 24612439 (+) True G381174
TU433120 lncRNA upstream 175896 24472673 ~ 24528819 (+) False LOC110523479
TU433388 lncRNA downstream 112600 24817386 ~ 24888977 (+) True G381305
TU433483 lncRNA downstream 223423 24928209 ~ 24930197 (+) True G381396
TU433597 lncRNA downstream 378581 25083367 ~ 25124168 (+) True G381505
TU434252 lncRNA downstream 468689 25173475 ~ 25173703 (+) True G382117
TU434253 lncRNA downstream 469759 25174545 ~ 25174812 (+) True G382118
XM_021602216.2 mRNA upstream 60703 24635703 ~ 24644012 (+) True LOC110523483
XM_021602200.2 mRNA upstream 231110 24454072 ~ 24473605 (+) False LOC110523479
XM_036977107.1 mRNA upstream 231110 24454653 ~ 24473605 (+) False LOC110523479
XM_021602201.2 mRNA upstream 231110 24454654 ~ 24473605 (+) False LOC110523479
XM_021602189.2 mRNA upstream 622761 24040149 ~ 24081954 (+) False zmp:0000000846
trnaa-ugc-10 mRNA downstream 14574 24719360 ~ 24719431 (+) True trnaa-ugc-10
XM_021602226.2 mRNA downstream 714919 25419705 ~ 25424226 (+) True aqp3b
XM_021602232.2 mRNA downstream 769127 25473913 ~ 25482789 (+) True LOC110523493
XM_036977129.1 mRNA downstream 824123 25528909 ~ 25561013 (+) False LOC110523494
XM_036977139.1 mRNA downstream 824142 25528928 ~ 25561013 (+) False LOC110523494
TU432381 other upstream 860370 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 860869 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 861004 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 861999 23838524 ~ 23842716 (+) False LOC110523468
TU432349 other upstream 963256 23740434 ~ 23741459 (+) True G380340
TU434321 other downstream 520656 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 1470159 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 1732833 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 1732873 26437659 ~ 26460535 (+) True LOC110522865
TU436048 other downstream 1957052 26661838 ~ 26663613 (+) True G383794